Complete Chloroplast Genome Sequence of Broomcorn Millet (Panicum miliaceum L.) and Comparative Analysis with Other Panicoideae Species

Broomcorn and foxtail millet were cultivated in Taiwan about 5000 years ago

(2017) Chen-Hwa Tsang et al.   Botanical Studies

Comparative Analysis of the Complete Chloroplast Genome of Four Known Ziziphus Species

(2017) Jian Huang et al.   Genes

Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors

(2016) Anke Hein et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)

(2016) Hong Yue et al.   BMC GENOMICS

Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)

(2016) Sean V. Burke et al.   BMC PLANT BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

(2016) Anna V. Williams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development

(2016) Hong Yue et al.   Frontiers in Plant Science

Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species

(2016) Sajjad Asaf et al.   Frontiers in Plant Science

Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.

(2016) Mengxing Wang et al.   Genes

The complete chloroplast genome sequence ofGentiana lawrenceivar. farreri(Gentianaceae) and comparative analysis with its congeneric species

(2016) Peng-Cheng Fu et al.   PeerJ

Phylogeny and photosynthesis of the grass tribe Paniceae

(2015) Jacob D. Washburn et al.   AMERICAN JOURNAL OF BOTANY

Plastid Genotyping Reveals Uniformity of cms-T Maize Cytoplasms

(2015) Massimo Bosacchi et al.   PLANT PHYSIOLOGY

A worldwide phylogenetic classification of the Poaceae (Gramineae)

(2015) Robert J. SORENG et al.   Journal of Systematics and Evolution

Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes

(2015) Jeffery M. Saarela et al.   AoB Plants

Complete chloroplast genome sequence of green foxtail (Setaria viridis), a promising model system for C4photosynthesis

(2015) Shuo Wang et al.   Mitochondrial DNA Part A

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

(2014) Brad R Ruhfel et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic relationships in the grass family (Poaceae) based on the nuclear single copy locus topoisomerase 6 compared with chloroplast DNA

(2014) Anne Blaner et al.   SYSTEMATICS AND BIODIVERSITY

Global changes in mineral transporters in tetraploid switchgrasses (Panicum virgatum L.)

(2014) Nathan A. Palmer et al.   Frontiers in Plant Science

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

(2012) Yuerong Zhang et al.   AUSTRALIAN JOURNAL OF BOTANY

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

(2012) Xiaojun Nie et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Chloroplast Genome Variation in Upland and Lowland Switchgrass

(2011) Hugh A. Young et al.   PLoS One

Phylogeny and a new tribal classification of the Panicoideae s.l. (Poaceae) based on plastid and nuclear sequence data and structural data

(2010) J. Gabriel Sánchez-Ken et al.   AMERICAN JOURNAL OF BOTANY

Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae

(2010) Mary M. Guisinger et al.   JOURNAL OF MOLECULAR EVOLUTION

Molecular Basis of the Waxy Endosperm Starch Phenotype in Broomcorn Millet (Panicum miliaceum L.)

(2010) H. V. Hunt et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Phylogeny of Setaria (Poaceae, Panicoideae, Paniceae) and Related Genera Based on the Chloroplast Gene ndhF

(2009) Elizabeth A. Kellogg et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION