Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard

Estimating genetic kin relationships in prehistoric populations

(2018) Jose Manuel Monroy Kuhn et al.   PLoS One

Archaeogenomic evidence reveals prehistoric matrilineal dynasty

(2017) Douglas J. Kennett et al.   Nature Communications

Genes mirror migrations and cultures in prehistoric Europe — a population genomic perspective

(2016) Torsten Günther et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

Genomic signals of migration and continuity in Britain before the Anglo-Saxons

(2016) Rui Martiniano et al.   Nature Communications

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

(2016) Stephan Schiffels et al.   Nature Communications

A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice

(2016) Alissa Mittnik et al.   PLoS One

NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data

(2015) Thorfinn Sand Korneliussen et al.   BIOINFORMATICS

The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape

(2015) George B.J. Busby et al.   CURRENT BIOLOGY

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

(2014) N. Rohland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Accurate and Robust Prediction of Genetic Relationship from Whole-Genome Sequences

(2014) Hong Li et al.   PLoS One

Lombards on the Move – An Integrative Study of the Migration Period Cemetery at Szólád, Hungary

(2014) Kurt W. Alt et al.   PLoS One

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

HAPLOFIND: A New Method for High-Throughput mtDNA Haplogroup Assignment

(2013) Dario Vianello et al.   HUMAN MUTATION

Accurate sex identification of ancient human remains using DNA shotgun sequencing

(2013) Pontus Skoglund et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Distinguishing the co-ancestries of haplogroup G Y-chromosomes in the populations of Europe and the Caucasus

(2012) Siiri Rootsi et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe

(2010) Natalie M Myres et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A rapid column-based ancient DNA extraction method for increased sample throughput

(2009) NADIN ROHLAND et al.   Molecular Ecology Resources