- Home
- Publications
- Publication Search
- Publication Details
Title
Remote homology and the functions of metagenomic dark matter
Authors
Keywords
-
Journal
Frontiers in Genetics
Volume 6, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2015-07-21
DOI
10.3389/fgene.2015.00234
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Bacterial collagenases – A review
- (2014) Ana Sofia Duarte et al. CRITICAL REVIEWS IN MICROBIOLOGY
- Botulinum neurotoxin homologs in non-Clostridiumspecies
- (2014) Michael J. Mansfield et al. FEBS LETTERS
- A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria
- (2014) Conor J. Meehan et al. Genome Biology and Evolution
- A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
- (2014) Johan Larsbrink et al. NATURE
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Tackling soil diversity with the assembly of large, complex metagenomes
- (2014) Adina Chuang Howe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently "Orphan" Viral Proteins
- (2013) D. B. Kuchibhatla et al. JOURNAL OF VIROLOGY
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements
- (2013) H. Guturu et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Functional assignment of metagenomic data: challenges and applications
- (2012) T. Prakash et al. BRIEFINGS IN BIOINFORMATICS
- Horizontal Gene Transfer Contributed to the Evolution of Extracellular Surface Structures: The Freshwater Polyp Hydra Is Covered by a Complex Fibrous Cuticle Containing Glycosaminoglycans and Proteins of the PPOD and SWT (Sweet Tooth) Families
- (2012) Angelika Böttger et al. PLoS One
- Metagenomics and the protein universe
- (2011) Adam Godzik CURRENT OPINION IN STRUCTURAL BIOLOGY
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- Composition bias and the origin of ORFan genes
- (2010) Inbal Yomtovian et al. BIOINFORMATICS
- Origins, evolution, and phenotypic impact of new genes
- (2010) H. Kaessmann GENOME RESEARCH
- Beyond the bounds of orthology: functional inference from metagenomic context
- (2010) Gregory Vey et al. Molecular BioSystems
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d
- (2010) Andrew C Doxey et al. BMC STRUCTURAL BIOLOGY
- A Primer on Metagenomics
- (2010) John C. Wooley et al. PLoS Computational Biology
- Isolation and Characterization of Metalloproteases with a Novel Domain Structure by Construction and Screening of Metagenomic Libraries
- (2009) T. Waschkowitz et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bioprospecting metagenomes: glycosyl hydrolases for converting biomass
- (2009) Luen-Luen Li et al. Biotechnology for Biofuels
- A Novel Combination of Factors, Termed SPIE, which Promotes Dopaminergic Neuron Differentiation from Human Embryonic Stem Cells
- (2009) Tandis Vazin et al. PLoS One
- Exploration of Uncharted Regions of the Protein Universe
- (2009) Lukasz Jaroszewski et al. PLOS BIOLOGY
- Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
- (2009) Pingzhao Hu et al. PLOS BIOLOGY
- A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
- (2009) Diego Cortez et al. GENOME BIOLOGY
- Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster
- (2008) Andrew C Doxey et al. BMC EVOLUTIONARY BIOLOGY
- The Thermolysin Family (M4) of Enzymes: Therapeutic and Biotechnological Potential
- (2008) Olayiwola A. Adekoya et al. Chemical Biology & Drug Design
- Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes
- (2008) Elliott H. Margulies et al. NATURE REVIEWS GENETICS
- Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
- (2008) Harry J. Flint et al. NATURE REVIEWS MICROBIOLOGY
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
- (2008) Jack A. Gilbert et al. PLoS One
- Profile-profile comparisons by COMPASS predict intricate homologies between protein families
- (2003) Ruslan I. Sadreyev et al. PROTEIN SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation