标题
Remote homology and the functions of metagenomic dark matter
作者
关键词
-
出版物
Frontiers in Genetics
Volume 6, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2015-07-21
DOI
10.3389/fgene.2015.00234
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Bacterial collagenases – A review
- (2014) Ana Sofia Duarte et al. CRITICAL REVIEWS IN MICROBIOLOGY
- Botulinum neurotoxin homologs in non-Clostridiumspecies
- (2014) Michael J. Mansfield et al. FEBS LETTERS
- A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria
- (2014) Conor J. Meehan et al. Genome Biology and Evolution
- A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
- (2014) Johan Larsbrink et al. NATURE
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Tackling soil diversity with the assembly of large, complex metagenomes
- (2014) Adina Chuang Howe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently "Orphan" Viral Proteins
- (2013) D. B. Kuchibhatla et al. JOURNAL OF VIROLOGY
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements
- (2013) H. Guturu et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Functional assignment of metagenomic data: challenges and applications
- (2012) T. Prakash et al. BRIEFINGS IN BIOINFORMATICS
- Horizontal Gene Transfer Contributed to the Evolution of Extracellular Surface Structures: The Freshwater Polyp Hydra Is Covered by a Complex Fibrous Cuticle Containing Glycosaminoglycans and Proteins of the PPOD and SWT (Sweet Tooth) Families
- (2012) Angelika Böttger et al. PLoS One
- Metagenomics and the protein universe
- (2011) Adam Godzik CURRENT OPINION IN STRUCTURAL BIOLOGY
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- Composition bias and the origin of ORFan genes
- (2010) Inbal Yomtovian et al. BIOINFORMATICS
- Origins, evolution, and phenotypic impact of new genes
- (2010) H. Kaessmann GENOME RESEARCH
- Beyond the bounds of orthology: functional inference from metagenomic context
- (2010) Gregory Vey et al. Molecular BioSystems
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d
- (2010) Andrew C Doxey et al. BMC STRUCTURAL BIOLOGY
- A Primer on Metagenomics
- (2010) John C. Wooley et al. PLoS Computational Biology
- Isolation and Characterization of Metalloproteases with a Novel Domain Structure by Construction and Screening of Metagenomic Libraries
- (2009) T. Waschkowitz et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bioprospecting metagenomes: glycosyl hydrolases for converting biomass
- (2009) Luen-Luen Li et al. Biotechnology for Biofuels
- A Novel Combination of Factors, Termed SPIE, which Promotes Dopaminergic Neuron Differentiation from Human Embryonic Stem Cells
- (2009) Tandis Vazin et al. PLoS One
- Exploration of Uncharted Regions of the Protein Universe
- (2009) Lukasz Jaroszewski et al. PLOS BIOLOGY
- Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
- (2009) Pingzhao Hu et al. PLOS BIOLOGY
- A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
- (2009) Diego Cortez et al. GENOME BIOLOGY
- Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster
- (2008) Andrew C Doxey et al. BMC EVOLUTIONARY BIOLOGY
- The Thermolysin Family (M4) of Enzymes: Therapeutic and Biotechnological Potential
- (2008) Olayiwola A. Adekoya et al. Chemical Biology & Drug Design
- Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes
- (2008) Elliott H. Margulies et al. NATURE REVIEWS GENETICS
- Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
- (2008) Harry J. Flint et al. NATURE REVIEWS MICROBIOLOGY
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
- (2008) Jack A. Gilbert et al. PLoS One
- Profile-profile comparisons by COMPASS predict intricate homologies between protein families
- (2003) Ruslan I. Sadreyev et al. PROTEIN SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started