Virus-host co-evolution under a modified nuclear genetic code

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

(2012) Ambrish Roy et al.   NUCLEIC ACIDS RESEARCH

Multilocus Phylogenetic Study of the Scheffersomyces Yeast Clade and Characterization of the N-Terminal Region of Xylose Reductase Gene

(2012) Hector Urbina et al.   PLoS One

Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution

(2012) Huiquan Liu et al.   PLoS One

Diversity and Physiological Characterization of D-Xylose-Fermenting Yeasts Isolated from the Brazilian Amazonian Forest

(2012) Raquel M. Cadete et al.   PLoS One

Paleovirology and virally derived immunity

(2012) Amr Aswad et al.   TRENDS IN ECOLOGY & EVOLUTION

Pichia sorbitophila , an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

(2012) Véronique Leh Louis et al.   G3-Genes Genomes Genetics

The Evolution of Endogenous Viral Elements

(2011) Edward C. Holmes   Cell Host & Microbe

Yeasty clocks: Dating genomic changes in yeasts

(2011) Thomas Rolland et al.   COMPTES RENDUS BIOLOGIES

The genetic code of the fungal CTG clade

(2011) Manuel A.S. Santos et al.   COMPTES RENDUS BIOLOGIES

Horizontal gene transfer in fungi

(2011) David A. Fitzpatrick   FEMS MICROBIOLOGY LETTERS

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

(2011) Dana J. Wohlbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen

(2011) R. Rocha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cap-snatching mechanism in yeast L-A double-stranded RNA virus

(2011) T. Fujimura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Paleovirology—ghosts and gifts of viruses past

(2011) Maulik R Patel et al.   Current Opinion in Virology

Gene transfer into the fungi

(2011) Thomas A. Richards et al.   Fungal Biology Reviews

Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus

(2010) Cletus P. Kurtzman   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Taming of the shrewd: novel eukaryotic genes from RNA viruses

(2010) Eugene V Koonin   BMC BIOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Dating the molecular clock in fungi – how close are we?

(2010) Mary L. Berbee et al.   Fungal Biology Reviews

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

The evolution of novel fungal genes from non-retroviral RNA viruses

(2009) Derek J Taylor et al.   BMC BIOLOGY

Evolutionary Capture of Viral and Plasmid DNA by Yeast Nuclear Chromosomes

(2009) A. Carolin Frank et al.   EUKARYOTIC CELL

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

CAIcal: A combined set of tools to assess codon usage adaptation

(2008) Pere Puigbò et al.   Biology Direct

The role of alternative genetic codes in viral evolution and emergence

(2008) Laura A. Shackelton et al.   JOURNAL OF THEORETICAL BIOLOGY

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

(2008) G. Aguileta et al.   SYSTEMATIC BIOLOGY