Maintaining Genome Integrity during Seed Development in Phaseolus vulgaris L.: Evidence from a Transcriptomic Profiling Study

RecQ Helicases Function in Development, DNA Repair, and Gene Targeting inPhyscomitrella patens

(2018) Gertrud Wiedemann et al.   PLANT CELL

Metabolic and gene expression hallmarks of seed germination uncovered by sodium butyrate in Medicago truncatula

(2018) Andrea Pagano et al.   PLANT CELL AND ENVIRONMENT

Establishing the Bases for Introducing the Unexplored Portuguese Common Bean Germplasm into the Breeding World

(2017) Susana T. Leitão et al.   Frontiers in Plant Science

The Seed Repair Response during Germination: Disclosing Correlations between DNA Repair, Antioxidant Response, and Chromatin Remodeling in Medicago truncatula

(2017) Andrea Pagano et al.   Frontiers in Plant Science

Expression Profiling of Castanea Genes during Resistant and Susceptible Interactions with the Oomycete Pathogen Phytophthora cinnamomi Reveal Possible Mechanisms of Immunity

(2017) Carmen Santos et al.   Frontiers in Plant Science

Mechanisms Used by Plants to Cope with DNA Damage

(2016) Zhubing Hu et al.   Annual Review of Plant Biology

Protecting DNA from errors and damage: an overview of DNA repair mechanisms in plants compared to mammals

(2016) Claudia P. Spampinato   CELLULAR AND MOLECULAR LIFE SCIENCES

Late seed maturation: drying without dying

(2016) Olivier Leprince et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential proteomics reveals the hallmarks of seed development in common bean ( Phaseolus vulgaris L.)

(2016) J.R. Parreira et al.   Journal of Proteomics

DNA damage checkpoint kinase ATM regulates germination and maintains genome stability in seeds

(2016) Wanda M. Waterworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CHD3 chromatin-remodeling factor PICKLE regulates floral transition partially via modulating LEAFY expression at the chromatin level in Arabidopsis

(2016) Xing Fu et al.   Science China-Life Sciences

Transcriptional identification and characterization of differentially expressed genes associated with embryogenesis in radish (Raphanus sativus L.)

(2016) Lulu Zhai et al.   Scientific Reports

SOG1: a master regulator of the DNA damage response in plants

(2015) Kaoru Okamoto Yoshiyama   GENES & GENETIC SYSTEMS

The importance of safeguarding genome integrity in germination and seed longevity

(2015) Wanda M. Waterworth et al.   JOURNAL OF EXPERIMENTAL BOTANY

Histone H2A/H2B chaperones: from molecules to chromatin-based functions in plant growth and development

(2015) Wangbin Zhou et al.   PLANT JOURNAL

DNA Damage Repair in the Context of Plant Chromatin

(2015) Mattia Donà et al.   PLANT PHYSIOLOGY

Proteomics of seed development, desiccation tolerance, germination and vigor

(2015) Wei-Qing Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Arabidopsis thaliana MCM3 single subunit of MCM2–7 complex functions as 3′ to 5′ DNA helicase

(2015) Irum Rizvi et al.   PROTOPLASMA

DNA damage and repair in plants – from models to crops

(2015) Vasilissa Manova et al.   Frontiers in Plant Science

RPA-coated single-stranded DNA as a platform for post-translational modifications in the DNA damage response

(2014) Alexandre Maréchal et al.   CELL RESEARCH

Plant DNA-damage repair/toleration 100 protein repairs UV-B-induced DNA damage

(2014) Nozomi Fujimori et al.   DNA REPAIR

Comparison of a quantitative Real-Time PCR assay and droplet digital PCR for copy number analysis of the CCL4L genes

(2014) Avani Bharuthram et al.   INFECTION GENETICS AND EVOLUTION

High-throughput and sensitive next-generation droplet digital PCR assay for the quantitation of the hepatitis C virus mutation at core amino acid 70

(2014) Motokazu Mukaide et al.   JOURNAL OF VIROLOGICAL METHODS

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis

(2014) Guang Li et al.   PLANT JOURNAL

Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis

(2014) Igor A. Yakovlev et al.   Tree Genetics & Genomes

The NEDD8 modification pathway in plants

(2014) Julia Mergner et al.   Frontiers in Plant Science

Maintenance of genome stability in plants: repairing DNA double strand breaks and chromatin structure stability

(2014) Sujit Roy   Frontiers in Plant Science

Seed-Development Programs: A Systems Biology–Based Comparison Between Dicots and Monocots

(2013) Nese Sreenivasulu et al.   Annual Review of Plant Biology

ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis

(2013) Kaoru O Yoshiyama et al.   EMBO REPORTS

Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease

(2013) Adam M Zawada et al.   Epigenetics

Expression of Epitope-Tagged SYN3 Cohesin Proteins Can Disrupt Meiosis in Arabidopsis

(2013) Li Yuan et al.   Journal of Genetics and Genomics

RNF111-Dependent Neddylation Activates DNA Damage-Induced Ubiquitination

(2013) Teng Ma et al.   MOLECULAR CELL

Absolute quantification by droplet digital PCR versus analog real-time PCR

(2013) Christopher M Hindson et al.   NATURE METHODS

Genetic analysis of the Replication Protein A large subunit family in Arabidopsis reveals unique and overlapping roles in DNA repair, meiosis and DNA replication

(2013) B. B. Aklilu et al.   NUCLEIC ACIDS RESEARCH

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor

(2012) Kwok Ki Ho et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Understanding the molecular pathways associated with seed vigor

(2012) Lorenzo Ventura et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Proteomic Analysis of Seed Development in Brassica campestri L

(2012) Wenlan Li et al.   PLoS One

Sequencing technology does not eliminate biological variability

(2011) Kasper D Hansen et al.   NATURE BIOTECHNOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis ATM and ATR Kinases Prevent Propagation of Genome Damage Caused by Telomere Dysfunction

(2011) S. Amiard et al.   PLANT CELL

The 1-Cys peroxiredoxin, a regulator of seed dormancy, functions as a molecular chaperone under oxidative stress conditions

(2011) Sun Young Kim et al.   PLANT SCIENCE

MutLα and Proliferating Cell Nuclear Antigen Share Binding Sites on MutSβ

(2010) Ravi R. Iyer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis

(2010) Beth A. Rowan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Elevated Histone Expression Promotes Life Span Extension

(2010) Jason Feser et al.   MOLECULAR CELL

The DNA Damage Response: Making It Safe to Play with Knives

(2010) Alberto Ciccia et al.   MOLECULAR CELL

Distinct Roles of the ATR Kinase and the Mre11-Rad50-Nbs1 Complex in the Maintenance of Chromosomal Stability inArabidopsis

(2010) Simon Amiard et al.   PLANT CELL

Genotoxic stress and DNA repair in plants: emerging functions and tools for improving crop productivity

(2010) Alma Balestrazzi et al.   PLANT CELL REPORTS

Arabidopsis thaliana GYRB3 Does Not Encode a DNA Gyrase Subunit

(2010) Katherine M. Evans-Roberts et al.   PLoS One

Seed desiccation: a bridge between maturation and germination

(2010) Ruthie Angelovici et al.   TRENDS IN PLANT SCIENCE

DNA Damage Response

(2010) G. Giglia-Mari et al.   Cold Spring Harbor Perspectives in Biology

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Distinct Nucleotide Binding/Hydrolysis Properties and Molar Ratio of MutSα and MutSβ Determine Their Differential Mismatch Binding Activities

(2009) Lei Tian et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Requirement for Abasic Endonuclease Gene Homologues in Arabidopsis Seed Development

(2009) Terence M. Murphy et al.   PLoS One

The Sec14 superfamily and mechanisms for crosstalk between lipid metabolism and lipid signaling

(2009) Vytas A. Bankaitis et al.   TRENDS IN BIOCHEMICAL SCIENCES

From intracellular signaling networks to cell death: the dual role of reactive oxygen species in seed physiology

(2008) Christophe Bailly et al.   COMPTES RENDUS BIOLOGIES

Transcriptional Regulation of Storage Protein Synthesis During Dicotyledon Seed Filling

(2008) J. Verdier et al.   PLANT AND CELL PHYSIOLOGY

A Heterocomplex of Iron Superoxide Dismutases Defends Chloroplast Nucleoids against Oxidative Stress and Is Essential for Chloroplast Development in Arabidopsis

(2008) F. Myouga et al.   PLANT CELL