Selection for Protein Stability Enriches for Epistatic Interactions

Compensatory mutations and epistasis for protein function

(2018) Jay F Storz   CURRENT OPINION IN STRUCTURAL BIOLOGY

Accelerated simulation of evolutionary trajectories in origin-fixation models

(2017) Ashley I. Teufel et al.   Journal of the Royal Society Interface

Sequence entropy of folding and the absolute rate of amino acid substitutions

(2017) Richard A. Goldstein et al.   Nature Ecology & Evolution

Epistasis and the Dynamics of Reversion in Molecular Evolution

(2016) D. M. McCandlish et al.   GENETICS

Selection maintaining protein stability at equilibrium

(2016) Sanzo Miyazawa   JOURNAL OF THEORETICAL BIOLOGY

Estimation of bias and variance of measurements made from tomography scans

(2016) Robert S Bradley   MEASUREMENT SCIENCE and TECHNOLOGY

Epistasis in protein evolution

(2016) Tyler N. Starr et al.   PROTEIN SCIENCE

The tangled bank of amino acids

(2016) Richard A. Goldstein et al.   PROTEIN SCIENCE

Contingency and entrenchment in protein evolution under purifying selection

(2015) Premal Shah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics

(2014) Adrian WR Serohijos et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Properties of selected mutations and genotypic landscapes under Fisher's geometric model

(2014) François Blanquart et al.   EVOLUTION

Adaptation in Tunably Rugged Fitness Landscapes: The Rough Mount Fuji Model

(2014) J. Neidhart et al.   GENETICS

Biophysics of protein evolution and evolutionary protein biophysics

(2014) T. Sikosek et al.   Journal of the Royal Society Interface

Mutational Studies on Resurrected Ancestral Proteins Reveal Conservation of Site-Specific Amino Acid Preferences throughout Evolutionary History

(2014) Valeria A. Risso et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Changing Geometry of a Fitness Landscape Along an Adaptive Walk

(2014) Devin Greene et al.   PLoS Computational Biology

SELECTION BIASES THE PREVALENCE AND TYPE OF EPISTASIS ALONG ADAPTIVE TRAJECTORIES

(2013) Jeremy A. Draghi et al.   EVOLUTION

Exact results for amplitude spectra of fitness landscapes

(2013) Johannes Neidhart et al.   JOURNAL OF THEORETICAL BIOLOGY

Contribution of Selection for Protein Folding Stability in Shaping the Patterns of Polymorphisms in Coding Regions

(2013) Adrian W.R. Serohijos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mutational effects on stability are largely conserved during protein evolution

(2013) O. Ashenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fitness conferred by replaced amino acids declines with time

(2012) S. A. Naumenko et al.   Biology Letters

Epistasis as the primary factor in molecular evolution

(2012) Michael S. Breen et al.   NATURE

Amino acid coevolution induces an evolutionary Stokes shift

(2012) D. D. Pollock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A biophysical protein folding model accounts for most mutational fitness effects in viruses

(2011) C. S. Wylie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution and evolutionary consequences of marginal thermostability in proteins

(2010) Richard A. Goldstein   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Stability effects of mutations and protein evolvability

(2009) Nobuhiko Tokuriki et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Different gene regulation strategies revealed by analysis of binding motifs

(2009) Zeba Wunderlich et al.   TRENDS IN GENETICS

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL