Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

The proteomic complexity and rise of the primordial ancestor of diversified life

(2011) Kyung Mo Kim et al.   BMC EVOLUTIONARY BIOLOGY

Mechanisms and functions of Hedgehog signalling across the metazoa

(2011) Philip W. Ingham et al.   NATURE REVIEWS GENETICS

Reductive evolution of proteomes and protein structures

(2011) M. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Influence of Indel Substitutions on Evolution of Bacteria of the PVC Superphylum, Revealed Using a Novel Computational Method

(2010) Olga K. Kamneva et al.   Genome Biology and Evolution

Proteome Evolution and the Metabolic Origins of Translation and Cellular Life

(2010) Derek Caetano-Anollés et al.   JOURNAL OF MOLECULAR EVOLUTION

Chemical synthesis of the mouse mitochondrial genome

(2010) Daniel G Gibson et al.   NATURE METHODS

Bacteria with a eukaryotic touch: A glimpse of ancient evolution?

(2010) P. Forterre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intermediate Steps

(2010) D. P. Devos et al.   SCIENCE

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

(2010) Nicolas Corradi et al.   Nature Communications

The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins

(2010) Rachel Santarella-Mellwig et al.   PLOS BIOLOGY

The origin, evolution and structure of the protein world

(2009) Gustavo Caetano-Anollés et al.   BIOCHEMICAL JOURNAL

SAM-T08, HMM-based protein structure prediction

(2009) K. Karplus   NUCLEIC ACIDS RESEARCH

The Evolutionary Mechanics of Domain Organization in Proteomes and the Rise of Modularity in the Protein World

(2009) Minglei Wang et al.   STRUCTURE

Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif

(2008) Thomas R Bürglin   BMC GENOMICS

Life without RNase P

(2008) Lennart Randau et al.   NATURE

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

(2008) Eugene V. Koonin et al.   NATURE REVIEWS MICROBIOLOGY