“Dark matter” worlds of unstable RNA and protein

Protecting the proteome: Eukaryotic cotranslational quality control pathways

(2014) Jens Lykke-Andersen et al.   JOURNAL OF CELL BIOLOGY

Most Human Proteins Made in Both Nucleus and Cytoplasm Turn Over within Minutes

(2014) Sabyasachi Baboo et al.   PLoS One

Mechanistic Interpretation of Promoter-Proximal Peaks and RNAPII Density Maps

(2013) Andreas H. Ehrensberger et al.   CELL

Temporal and spatial characterization of nonsense-mediated mRNA decay

(2013) T. Trcek et al.   GENES & DEVELOPMENT

Eukaryotic transcriptional dynamics: from single molecules to cell populations

(2013) Antoine Coulon et al.   NATURE REVIEWS GENETICS

Nuclear translation for immunosurveillance

(2013) J. W. Yewdell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway

(2013) S. Apcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization of the joining of ribosomal subunits reveals the presence of 80S ribosomes in the nucleus

(2013) K. Al-Jubran et al.   RNA

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

(2012) C. Fritsch et al.   GENOME RESEARCH

Nuclear translation visualized by ribosome-bound nascent chain puromycylation

(2012) Alexandre David et al.   JOURNAL OF CELL BIOLOGY

Peptidomic discovery of short open reading frame–encoded peptides in human cells

(2012) Sarah A Slavoff et al.   Nature Chemical Biology

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dark Matter RNA: Existence, Function, and Controversy

(2012) Philipp Kapranov et al.   Frontiers in Genetics

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

Ribosomal proteins' association with transcription sites peaks at tRNA genes in Schizosaccharomyces pombe

(2011) S. De et al.   RNA

Cotranscriptional effect of a premature termination codon revealed by live-cell imaging

(2011) V. de Turris et al.   RNA

tsORFdb: Theoretical Small Open Reading Frames (ORFs) database and massProphet: Peptide Mass Fingerprinting (PMF) tool for unknown small functional ORFs

(2010) Hyoung-Sam Heo et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Detection of Abortive RNA Transcripts in Vivo

(2009) S. R. Goldman et al.   SCIENCE

Overreplication of short DNA regions during S phase in human cells

(2008) M. Gomez et al.   GENES & DEVELOPMENT