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Title
WHEN CLOUD COMPUTING MEETS BIOINFORMATICS: A REVIEW
Authors
Keywords
-
Journal
Journal of Bioinformatics and Computational Biology
Volume 11, Issue 05, Pages 1330002
Publisher
World Scientific Pub Co Pte Lt
Online
2013-08-26
DOI
10.1142/s0219720013300025
References
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Related references
Note: Only part of the references are listed.- Fulcrum: condensing redundant reads from high-throughput sequencing studies
- (2012) Matthew S. Burriesci et al. BIOINFORMATICS
- FX: an RNA-Seq analysis tool on the cloud
- (2012) Dongwan Hong et al. BIOINFORMATICS
- Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses
- (2012) Laurent Jourdren et al. BIOINFORMATICS
- Bioinformatics clouds for big data manipulation
- (2012) Lin Dai et al. Biology Direct
- Cloud computing for comparative genomics
- (2012) Dennis P Wall et al. BMC BIOINFORMATICS
- Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds
- (2012) Sebastian Schönherr et al. BMC BIOINFORMATICS
- Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
- (2012) Konstantinos Krampis et al. BMC BIOINFORMATICS
- MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification
- (2011) Ananth Kalyanaraman et al. BIOINFORMATICS
- eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study
- (2011) Z. Wang et al. BIOINFORMATICS
- SEAL: a distributed short read mapping and duplicate removal tool
- (2011) L. Pireddu et al. BIOINFORMATICS
- Gene set analysis in the cloud
- (2011) L. Zhang et al. BIOINFORMATICS
- Galaxy CloudMan: delivering cloud compute clusters
- (2011) Enis Afgan et al. BMC BIOINFORMATICS
- An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
- (2011) Ronald C Taylor BMC BIOINFORMATICS
- PeakRanger: A cloud-enabled peak caller for ChIP-seq data
- (2011) Xin Feng et al. BMC BIOINFORMATICS
- CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
- (2011) Samuel V Angiuoli et al. BMC BIOINFORMATICS
- Genome giant offers data service
- (2011) Ewen Callaway NATURE
- Harnessing cloud computing with Galaxy Cloud
- (2011) Enis Afgan et al. NATURE BIOTECHNOLOGY
- Reorganizing the protein space at the Universal Protein Resource (UniProt)
- (2011) NUCLEIC ACIDS RESEARCH
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Cloud computing and the DNA data race
- (2010) Michael C Schatz et al. NATURE BIOTECHNOLOGY
- In silico research in the era of cloud computing
- (2010) Joel T Dudley et al. NATURE BIOTECHNOLOGY
- The case for cloud computing in genome informatics
- (2010) Lincoln D Stein GENOME BIOLOGY
- Cloud-scale RNA-sequencing differential expression analysis with Myrna
- (2010) Ben Langmead et al. GENOME BIOLOGY
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Cloud computing
- (2009) A. Bateman et al. BIOINFORMATICS
- CloudBurst: highly sensitive read mapping with MapReduce
- (2009) M. C. Schatz BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- SNP detection for massively parallel whole-genome resequencing
- (2009) R. Li et al. GENOME RESEARCH
- Next-generation DNA sequencing techniques
- (2009) Wilhelm J. Ansorge New Biotechnology
- The European Bioinformatics Institute's data resources
- (2009) Catherine Brooksbank et al. NUCLEIC ACIDS RESEARCH
- Searching for SNPs with cloud computing
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- SOAP: short oligonucleotide alignment program
- (2008) R. Li et al. BIOINFORMATICS
- Using quality scores and longer reads improves accuracy of Solexa read mapping
- (2008) Andrew D Smith et al. BMC BIOINFORMATICS
- MapReduce
- (2008) Jeffrey Dean et al. COMMUNICATIONS OF THE ACM
- Parallel Computing Experiences with CUDA
- (2008) Michael Garland et al. IEEE MICRO
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