WHEN CLOUD COMPUTING MEETS BIOINFORMATICS: A REVIEW

Fulcrum: condensing redundant reads from high-throughput sequencing studies

(2012) Matthew S. Burriesci et al.   BIOINFORMATICS

FX: an RNA-Seq analysis tool on the cloud

(2012) Dongwan Hong et al.   BIOINFORMATICS

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

(2012) Laurent Jourdren et al.   BIOINFORMATICS

Bioinformatics clouds for big data manipulation

(2012) Lin Dai et al.   Biology Direct

Cloud computing for comparative genomics

(2012) Dennis P Wall et al.   BMC BIOINFORMATICS

Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds

(2012) Sebastian Schönherr et al.   BMC BIOINFORMATICS

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community

(2012) Konstantinos Krampis et al.   BMC BIOINFORMATICS

MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification

(2011) Ananth Kalyanaraman et al.   BIOINFORMATICS

eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study

(2011) Z. Wang et al.   BIOINFORMATICS

SEAL: a distributed short read mapping and duplicate removal tool

(2011) L. Pireddu et al.   BIOINFORMATICS

Gene set analysis in the cloud

(2011) L. Zhang et al.   BIOINFORMATICS

Galaxy CloudMan: delivering cloud compute clusters

(2011) Enis Afgan et al.   BMC BIOINFORMATICS

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

(2011) Ronald C Taylor   BMC BIOINFORMATICS

PeakRanger: A cloud-enabled peak caller for ChIP-seq data

(2011) Xin Feng et al.   BMC BIOINFORMATICS

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

(2011) Samuel V Angiuoli et al.   BMC BIOINFORMATICS

Genome giant offers data service

(2011) Ewen Callaway   NATURE

Harnessing cloud computing with Galaxy Cloud

(2011) Enis Afgan et al.   NATURE BIOTECHNOLOGY

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Cloud computing and the DNA data race

(2010) Michael C Schatz et al.   NATURE BIOTECHNOLOGY

In silico research in the era of cloud computing

(2010) Joel T Dudley et al.   NATURE BIOTECHNOLOGY

The case for cloud computing in genome informatics

(2010) Lincoln D Stein   GENOME BIOLOGY

Cloud-scale RNA-sequencing differential expression analysis with Myrna

(2010) Ben Langmead et al.   GENOME BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Cloud computing

(2009) A. Bateman et al.   BIOINFORMATICS

CloudBurst: highly sensitive read mapping with MapReduce

(2009) M. C. Schatz   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Next-generation DNA sequencing techniques

(2009) Wilhelm J. Ansorge   New Biotechnology

The European Bioinformatics Institute's data resources

(2009) Catherine Brooksbank et al.   NUCLEIC ACIDS RESEARCH

Searching for SNPs with cloud computing

(2009) Ben Langmead et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Using quality scores and longer reads improves accuracy of Solexa read mapping

(2008) Andrew D Smith et al.   BMC BIOINFORMATICS

MapReduce

(2008) Jeffrey Dean et al.   COMMUNICATIONS OF THE ACM

Parallel Computing Experiences with CUDA

(2008) Michael Garland et al.   IEEE MICRO