Virmid: accurate detection of somatic mutations with sample impurity inference
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Virmid: accurate detection of somatic mutations with sample impurity inference
Authors
Keywords
Somatic Mutation, Read Depth, Breast Cancer Data, Genotype Probability, Mutation Burden
Journal
GENOME BIOLOGY
Volume 14, Issue 8, Pages R90
Publisher
Springer Nature
Online
2013-08-29
DOI
10.1186/gb-2013-14-8-r90
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
- (2013) Kristian Cibulskis et al. NATURE BIOTECHNOLOGY
- JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
- (2012) Andrew Roth et al. BIOINFORMATICS
- Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score
- (2012) Hayan Lee et al. BIOINFORMATICS
- PurityEst: estimating purity of human tumor samples using next-generation sequencing data
- (2012) X. Su et al. BIOINFORMATICS
- Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
- (2012) Christopher T. Saunders et al. BIOINFORMATICS
- GemSIM: general, error-model based simulator of next-generation sequencing data
- (2012) Kerensa E McElroy et al. BMC GENOMICS
- Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
- (2012) Gilad D. Evrony et al. CELL
- The Life History of 21 Breast Cancers
- (2012) Serena Nik-Zainal et al. CELL
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- NDesign: software for study design for the detection of rare variants from next-generation sequencing data
- (2012) Yuki Sugaya et al. JOURNAL OF HUMAN GENETICS
- Comprehensive molecular portraits of human breast tumours
- (2012) Daniel C. Koboldt et al. NATURE
- De novo mutations revealed by whole-exome sequencing are strongly associated with autism
- (2012) Stephan J. Sanders et al. NATURE
- Absolute quantification of somatic DNA alterations in human cancer
- (2012) Scott L Carter et al. NATURE BIOTECHNOLOGY
- Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
- (2012) Christopher E Barbieri et al. NATURE GENETICS
- De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly
- (2012) Jeong Ho Lee et al. NATURE GENETICS
- Noninvasive Whole-Genome Sequencing of a Human Fetus
- (2012) J. O. Kitzman et al. Science Translational Medicine
- SomaticSniper: identification of somatic point mutations in whole genome sequencing data
- (2011) David E. Larson et al. BIOINFORMATICS
- Exome sequencing supports a de novo mutational paradigm for schizophrenia
- (2011) Bin Xu et al. NATURE GENETICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Universal noninvasive detection of solid organ transplant rejection
- (2011) T. M. Snyder et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
- (2010) Rodrigo Goya et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
- (2009) Daniel C. Koboldt et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Efficacy of laser capture microdissection plus RT-PCR technique in analyzing gene expression levels in human gastric cancer and colon cancer
- (2008) Hiroshi Makino et al. BMC CANCER
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More