PurityEst: estimating purity of human tumor samples using next-generation sequencing data

Absolute quantification of somatic DNA alterations in human cancer

(2012) Scott L Carter et al.   NATURE BIOTECHNOLOGY

BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data

(2011) Guoqiang Yu et al.   BIOINFORMATICS

The genomic complexity of primary human prostate cancer

(2011) Michael F. Berger et al.   NATURE

Allele-specific copy number analysis of tumors

(2010) P. Van Loo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrated study of copy number states and genotype calls using high-density SNP arrays

(2009) Wei Sun et al.   NUCLEIC ACIDS RESEARCH

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS