Under a New Light: Regulation of Light-Dependent Pathways by Non-coding RNAs

Coordinated regulation of Arabidopsis microRNA biogenesis and red light signaling through Dicer-like 1 and phytochrome-interacting factor 4

(2018) Zhenfei Sun et al.   PLoS Genetics

A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT ) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana

(2017) Fernando E. Díaz-Manzano et al.   NEW PHYTOLOGIST

The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering

(2017) Rossana Henriques et al.   NEW PHYTOLOGIST

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

Casting Away the Shadows: Elucidating the Role of Light-mediated Posttranscriptional Control in Plants

(2017) Carlos E. Hernando et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

The shade-avoidance syndrome: multiple signals and ecological consequences

(2017) Carlos L. Ballaré et al.   PLANT CELL AND ENVIRONMENT

The functions of plant small RNAs in development and in stress responses

(2017) Shengjun Li et al.   PLANT JOURNAL

Developmental reprogramming by UV-B radiation in plants

(2017) Marcela Dotto et al.   PLANT SCIENCE

Effective enhancement of resistance to Phytophthora infestans by overexpression of miR172a and b in Solanum lycopersicum

(2017) Yushi Luan et al.   PLANTA

Arabidopsis noncoding RNA modulates seedling greening during deetiolation

(2017) Yuqiu Wang et al.   Science China-Life Sciences

Phytochrome-interacting factors directly suppress MIR156 expression to enhance shade-avoidance syndrome in Arabidopsis

(2017) Yurong Xie et al.   Nature Communications

Response of miR156-SPL Module during the Red Peel Coloration of Bagging-Treated Chinese Sand Pear (Pyrus pyrifolia Nakai)

(2017) Minjie Qian et al.   Frontiers in Physiology

Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development

(2016) Bo Zhou et al.   BMC PLANT BIOLOGY

Integrated RNA-seq and sRNA-seq analysis reveals miRNA effects on secondary metabolism in Solanum tuberosum L

(2016) Yan Qiao et al.   MOLECULAR GENETICS AND GENOMICS

Repression of MYBL2 by Both microRNA858a and HY5 Leads to the Activation of Anthocyanin Biosynthetic Pathway in Arabidopsis

(2016) Yulong Wang et al.   Molecular Plant

MicroRNA858 is a potential regulator of phenylpropanoid pathway and plant development in Arabidopsis

(2016) Deepika Sharma et al.   PLANT PHYSIOLOGY

DELAY OF GERMINATION1(DOG1) regulates both seed dormancy and flowering time through microRNA pathways

(2016) Heqiang Huo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Natural Light/Dark Cycle Regulation of Carbon-Nitrogen Metabolism and Gene Expression in Rice Shoots

(2016) Haixing Li et al.   Frontiers in Plant Science

Identification of MicroRNAs and Their Targets Associated with Fruit-Bagging and Subsequent Sunlight Re-exposure in the “Granny Smith” Apple Exocarp Using High-Throughput Sequencing

(2016) Dong Qu et al.   Frontiers in Plant Science

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits

(2015) Hai Wang et al.   Molecular Plant

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dual functions of GmTOE4a in the regulation of photoperiod-mediated flowering and plant morphology in soybean

(2015) Xiaohui Zhao et al.   PLANT MOLECULAR BIOLOGY

GmmiR156b overexpression delays flowering time in soybean

(2015) Dong Cao et al.   PLANT MOLECULAR BIOLOGY

The Micro-RNA172c-APETALA2-1 Node as a Key Regulator of the Common Bean-Rhizobium etliNitrogen Fixation Symbiosis

(2015) Bárbara Nova-Franco et al.   PLANT PHYSIOLOGY

Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato

(2015) Xiaoyun Jia et al.   PLANTA

Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice

(2015) Wei Sun et al.   Frontiers in Plant Science

Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors

(2015) Tian Fan et al.   PLoS One

Identification of MicroRNAs in Response to Different Day Lengths in Soybean Using High-Throughput Sequencing and qRT-PCR

(2015) Wenbin Li et al.   PLoS One

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

Regulation of flowering time by the miR156-mediated age pathway

(2014) Jia-Wei Wang   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional interference by antisense RNA is required for circadian clock function

(2014) Zhihong Xue et al.   NATURE

HUA ENHANCER1 Is Involved in Posttranscriptional Regulation of Positive and Negative Regulators inArabidopsisPhotomorphogenesis

(2014) Huang-Lung Tsai et al.   PLANT CELL

MicroRNA408 Is Critical for theHY5-SPL7Gene Network That Mediates the Coordinated Response to Light and Copper

(2014) Huiyong Zhang et al.   PLANT CELL

PIFs: Systems Integrators in Plant Development

(2014) P. Leivar et al.   PLANT CELL

ThemiR156-SPL9-DFRpathway coordinates the relationship between development and abiotic stress tolerance in plants

(2014) Long-Gang Cui et al.   PLANT JOURNAL

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

COP1 E3 ligase protects HYL1 to retain microRNA biogenesis

(2014) Seok Keun Cho et al.   Nature Communications

Arabidopsis miR171-Targeted Scarecrow-Like Proteins Bind to GT cis-Elements and Mediate Gibberellin-Regulated Chlorophyll Biosynthesis under Light Conditions

(2014) Zhaoxue Ma et al.   PLoS Genetics

A survey of the small RNA population during far-red light-induced apical hook opening

(2014) Ying Li et al.   Frontiers in Plant Science

PLncDB: plant long non-coding RNA database

(2013) J. Jin et al.   BIOINFORMATICS

Identification of UV-B-induced microRNAs in wheat

(2013) B. Wang et al.   GENETICS AND MOLECULAR RESEARCH

Repression of Growth Regulating Factors by the MicroRNA396 Inhibits Cell Proliferation by UV-B Radiation in Arabidopsis Leaves

(2013) R. Casadevall et al.   PLANT CELL

Regulation of FLOWERING LOCUS T by a MicroRNA in Brachypodium distachyon

(2013) L. Wu et al.   PLANT CELL

MicroRNA156: A Potential Graft-Transmissible MicroRNA That Modulates Plant Architecture and Tuberization in Solanum tuberosum ssp. andigena

(2013) S. Bhogale et al.   PLANT PHYSIOLOGY

Identification and Characterization of MicroRNAs in the Leaf of Ma Bamboo (Dendrocalamus latiflorus) by Deep Sequencing

(2013) Hansheng Zhao et al.   PLoS One

The Suppression of WRKY44 by GIGANTEA-miR172 Pathway Is Involved in Drought Response of Arabidopsis thaliana

(2013) Yingying Han et al.   PLoS One

Analysis of different pigmentation patterns in ‘Mantianhong’ (Pyrus pyrifolia Nakai) and ‘Cascade’ (Pyrus communis L.) under bagging treatment and postharvest UV-B/visible irradiation conditions

(2013) Minjie Qian et al.   SCIENTIA HORTICULTURAE

Arabidopsis FLC clade members form flowering-repressor complexes coordinating responses to endogenous and environmental cues

(2013) Xiaofeng Gu et al.   Nature Communications

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network inArabidopsis

(2012) Pablo Leivar et al.   PLANT CELL

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

Circadian changes in long noncoding RNAs in the pineal gland

(2012) S. L. Coon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-dimensional regulation of metabolic networks shaping plant development and performance

(2011) R. Kooke et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

The SOC1-SPL module integrates photoperiod and gibberellic acid signals to control flowering time in Arabidopsis

(2011) Jae-Hoon Jung et al.   PLANT JOURNAL

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

Arabidopsis PHYTOCHROME INTERACTING FACTOR Proteins Promote Phytochrome B Polyubiquitination by COP1 E3 Ligase in the Nucleus

(2010) I.-C. Jang et al.   PLANT CELL

Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2

(2010) L. Yant et al.   PLANT CELL

Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

(2010) Huiyong Zhang et al.   PLANT JOURNAL

Overexpression of microRNA395c or 395e affects differently the seed germination of Arabidopsis thaliana under stress conditions

(2010) Joo Yeol Kim et al.   PLANTA

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Graft-transmissible induction of potato tuberization by the microRNA miR172

(2009) A. Martin et al.   DEVELOPMENT

Diurnal oscillation in the accumulation ofArabidopsismicroRNAs, miR167, miR168, miR171 and miR398

(2009) Christelle Siré et al.   FEBS LETTERS

UV-B-responsive microRNAs in Populus tremula

(2009) Xiaoyun Jia et al.   JOURNAL OF PLANT PHYSIOLOGY

Repression of Flowering by the miR172 Target SMZ

(2009) Johannes Mathieu et al.   PLOS BIOLOGY

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

(2009) Samuel P Hazen et al.   GENOME BIOLOGY

Floral meristem initiation and meristem cell fate are regulated by the maize AP2 genes ids1 and sid1

(2008) G. Chuck et al.   DEVELOPMENT

Distinct Light-Initiated Gene Expression and Cell Cycle Programs in the Shoot Apex and Cotyledons of Arabidopsis

(2008) E. Lopez-Juez et al.   PLANT CELL

MYBL2 is a new regulator of flavonoid biosynthesis inArabidopsis thaliana

(2008) Christian Dubos et al.   PLANT JOURNAL

AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis

(2008) Kyoko Matsui et al.   PLANT JOURNAL

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

(2008) O. Loudet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA