Comparative Genomics of Degradative Novosphingobium Strains With Special Reference to Microcystin-Degrading Novosphingobium sp. THN1

Comparative genomic analysis of five high drug-resistance Aeromonas hydrophila strains induced by doxycycline in laboratory and nine reference strains in Genbank

(2018) Guoliang Zhang et al.   AQUACULTURE RESEARCH

Pan-genome analyses of 24 Shewanella strains re-emphasize the diversification of their functions yet evolutionary dynamics of metal-reducing pathway

(2018) Chaofang Zhong et al.   Biotechnology for Biofuels

Bioremediation of organophosphorus pesticide phorate in soil by microbial consortia

(2018) Monu Jariyal et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Pan-genomic approach shows insight of genetic divergence and pathogenic-adaptation of Pasteurella multocida

(2018) Raquel Hurtado et al.   GENE

Novosphingobium lubricantis sp. nov., isolated from a coolant lubricant emulsion

(2018) Peter Kämpfer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Novosphingobium arvoryzae sp. nov., isolated from a flooded rice field

(2018) Shih-Yi Sheu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes

(2018) Ivan Rodrigo Wolf et al.   BMC GENOMICS

Novosphingobium humi sp. nov., isolated from soil of a military shooting range

(2017) Jong Woo Hyeon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Novosphingobium fontis sp. nov., isolated from a spring

(2017) Shih-Yi Sheu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Novosphingobium ipomoeae sp. nov., isolated from a water convolvulus field

(2017) Wen-Ming Chen et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid

(2017) Botond Hegedűs et al.   JOURNAL OF BIOTECHNOLOGY

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice

(2017) Ramya Krishnan et al.   RESEARCH IN MICROBIOLOGY

Comparative genomic analysis of 26 Sphingomonas and Sphingobium strains: Dissemination of bioremediation capabilities, biodegradation potential and horizontal gene transfer

(2017) Qiang Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium

(2017) Roshan Kumar et al.   mSystems

Novosphingobium profundi sp. nov. isolated from a deep-sea seamount

(2016) De-Chao Zhang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Presence or Absence of mlr Genes and Nutrient Concentrations Co-Determine the Microcystin Biodegradation Efficiency of a Natural Bacterial Community

(2016) María Lezcano et al.   Toxins

Cyanotoxin degradation activity and mlr gene expression profiles of a Sphingopyxis sp. isolated from Lake Champlain, Canada

(2016) Ehsan Maghsoudi et al.   Environmental Science-Processes & Impacts

Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics

(2016) Xian Zhang et al.   Frontiers in Microbiology

Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics

(2015) Rose S. Kantor et al.   ENVIRONMENTAL MICROBIOLOGY

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Novosphingobium pentaromativorans US6-1T

(2015) Dong Hee Choi et al.   Standards in Genomic Sciences

Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains

(2015) S. L. Pearce et al.   G3-Genes Genomes Genetics

Polycyclic aromatic hydrocarbons in road-deposited sediments, water sediments, and soils in Sydney, Australia: Comparisons of concentration distribution, sources and potential toxicity

(2014) Thuy Chung Nguyen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Bioavailability of (Geno)toxic Contaminants in Polycyclic Aromatic Hydrocarbon–Contaminated Soil Before and After Biological Treatment

(2014) Jing Hu et al.   ENVIRONMENTAL ENGINEERING SCIENCE

Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities

(2013) Frank O. Aylward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation

(2013) Han Gan et al.   BMC GENOMICS

Comparative genomic analysis provides insights into the evolution and niche adaptation of marineMagnetospirasp. QH-2 strain

(2013) Boyang Ji et al.   ENVIRONMENTAL MICROBIOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

A Tribute to Disorder in the Genome of the Bloom-Forming Freshwater Cyanobacterium Microcystis aeruginosa

(2013) Jean-François Humbert et al.   PLoS One

Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria

(2013) Wei Lin et al.   Scientific Reports

Kraft lignin biodegradation by Novosphingobium sp. B-7 and analysis of the degradation process

(2012) Yuehui Chen et al.   BIORESOURCE TECHNOLOGY

Defining bacterial species in the genomic era: insights from the genus Acinetobacter

(2012) Jacqueline Z-M Chan et al.   BMC MICROBIOLOGY

Novosphingobium lindaniclasticum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite

(2012) A. Saxena et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Active and silent members in the mlr gene cluster of a microcystin-degrading bacterium isolated from Lake Taihu, China

(2011) Yongguang Jiang et al.   FEMS MICROBIOLOGY LETTERS

De Novo Sequencing and Assembly of the Whole Genome of Novosphingobium sp. Strain PP1Y

(2011) V. D'Argenio et al.   JOURNAL OF BACTERIOLOGY

The Marine Isolate Novosphingobium sp. PP1Y Shows Specific Adaptation to Use the Aromatic Fraction of Fuels as the Sole Carbon and Energy Source

(2011) Eugenio Notomista et al.   MICROBIAL ECOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Third Generation DNA Sequencing: Pacific Biosciences' Single Molecule Real Time Technology

(2010) Alice McCarthy   CHEMISTRY & BIOLOGY

Biodegradation of Microcystin-RR by a New Isolated Sphingopyxis sp. USTB-05

(2010) Junfeng WANG et al.   CHINESE JOURNAL OF CHEMICAL ENGINEERING

Molecular Mechanisms of Microcystin Toxicity in Animal Cells

(2010) Alexandre Campos et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Standard operating procedure for computing pangenome trees

(2010) Lars Snipen et al.   Standards in Genomic Sciences

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Two-Decade Reconstruction of Algal Blooms in China’s Lake Taihu

(2009) Hongtao Duan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Enrichment and cultivation of pelagic bacteria from a humic lake using phenol and humic matter additions

(2009) Kristine Michelle L. Hutalle-Schmelzer et al.   FEMS MICROBIOLOGY ECOLOGY

Contribution of the Estrogen-Degrading Bacterium Novosphingobium sp. Strain JEM-1 to Estrogen Removal in Wastewater Treatment

(2009) Toshikazu Hashimoto et al.   JOURNAL OF ENVIRONMENTAL ENGINEERING

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular characteristics of xenobiotic-degrading sphingomonads

(2008) Andreas Stolz   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of genomic island predictors using a comparative genomics approach

(2008) Morgan GI Langille et al.   BMC BIOINFORMATICS

Single-molecule DNA sequencing technologies for future genomics research

(2008) Pushpendra K. Gupta   TRENDS IN BIOTECHNOLOGY