Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

Lycopene Attenuates Tulathromycin and Diclofenac Sodium-Induced Cardiotoxicity in Mice

(2018) Mohamed Abdel-Daim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Injectable antimicrobials in commercial feedlot cattle and their effect on the nasopharyngeal microbiota and antimicrobial resistance

(2018) Devin B. Holman et al.   VETERINARY MICROBIOLOGY

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Prevalence and antimicrobial susceptibility of Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni isolated from the lower respiratory tract of healthy feedlot cattle and those diagnosed with bovine respiratory disease

(2017) Edouard Timsit et al.   VETERINARY MICROBIOLOGY

Changes in the intestinal microbiota following the administration of azithromycin in a randomised placebo-controlled trial among infants in south India

(2017) Edward P. K. Parker et al.   Scientific Reports

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

(2016) Xiang Yang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGARes: an antimicrobial resistance database for high throughput sequencing

(2016) Steven M. Lakin et al.   NUCLEIC ACIDS RESEARCH

A retrospective epidemiological analysis of risk factors for a primary necropsy diagnosis of bovine respiratory disease

(2016) G.M. Murray et al.   PREVENTIVE VETERINARY MEDICINE

A mixed treatment meta-analysis of antibiotic treatment options for bovine respiratory disease – An update

(2016) A.M. O’Connor et al.   PREVENTIVE VETERINARY MEDICINE

Evolution of the nasopharyngeal microbiota of beef cattle from weaning to 40 days after arrival at a feedlot

(2016) Edouard Timsit et al.   VETERINARY MICROBIOLOGY

Resistome diversity in cattle and the environment decreases during beef production

(2016) Noelle R Noyes et al.   eLife

Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems

(2016) Noelle R. Noyes et al.   Scientific Reports

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities

(2015) Michael A. Peabody et al.   BMC BIOINFORMATICS

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Resistance gene naming and numbering: is it a new gene or not?

(2015) Ruth M. Hall et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Structured Literature Review of Responses of Cattle to Viral and Bacterial Pathogens Causing Bovine Respiratory Disease Complex

(2015) G.P. Grissett et al.   JOURNAL OF VETERINARY INTERNAL MEDICINE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

The nasopharyngeal microbiota of feedlot cattle

(2015) Devin B. Holman et al.   Scientific Reports

Spread of tetracycline resistance genes at a conventional dairy farm

(2015) Martina Kyselková et al.   Frontiers in Microbiology

Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin

(2015) Lindsey Chambers et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Unexpected cross-species contamination in genome sequencing projects

(2014) Samier Merchant et al.   PeerJ

BRD in 2014: where have we been, where are we now, and where do we want to go?

(2014) W. Mark Hilton   ANIMAL HEALTH RESEARCH REVIEWS

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Susceptibility to tulathromycin in Mannheimia haemolytica isolated from feedlot cattle over a 3-year period

(2013) Trevor W. Alexander et al.   Frontiers in Microbiology

Effect of subtherapeutic vs. therapeutic administration of macrolides on antimicrobial resistance in Mannheimia haemolytica and enterococci isolated from beef cattle

(2013) Rahat Zaheer et al.   Frontiers in Microbiology

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

A ten-year (2000–2009) study of antimicrobial susceptibility of bacteria that cause bovine respiratory disease complex—Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni—in the United States and Canada

(2012) Ellen Portis et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Assessment of the cardiotoxicity of tulathromycin in rabbits

(2011) Ayse Er et al.   ACTA VETERINARIA HUNGARICA

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Safety of Antibiotic Drugs in Food Animals: Comparison of Findings from Preapproval Studies and Postapproval Experience in the United States with Safety Information in Published Literature

(2011) Tomislav Modric et al.   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Probiotics and prebiotics in animal feeding for safe food production

(2010) Francesca Gaggìa et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Antimicrobial susceptibility of enteric bacteria recovered from feedlot cattle administered chlortetracycline in feed

(2008) Tammy M. Platt et al.   AMERICAN JOURNAL OF VETERINARY RESEARCH

Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin1

(2008) J. Chen et al.   JOURNAL OF ANIMAL SCIENCE

Susceptibility testing of tulathromycin: Interpretative breakpoints and susceptibility of field isolates

(2007) K.S. Godinho   VETERINARY MICROBIOLOGY