Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

(2017) Sarahi L. Garcia et al.   ISME Journal

Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria

(2016) Rohit Ghai et al.   ISME Journal

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

(2016) Matthew L Bendall et al.   ISME Journal

Effect of particle size and composition of suspended sediment on denitrification in river water

(2016) Zhimei Jia et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland

(2016) Timofey Skvortsov et al.   PLoS One

Bacterial Communities of Three Saline Meromictic Lakes in Central Asia

(2016) Bayanmunkh Baatar et al.   PLoS One

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes

(2015) Adrian-Ştefan Andrei et al.   ISME Journal

Vertical Distribution of Functional Potential and Active Microbial Communities in Meromictic Lake Kivu

(2015) Özgul İnceoğlu et al.   MICROBIAL ECOLOGY

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

(2015) Mylène Hugoni et al.   MICROBIAL ECOLOGY

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ace Lake: three decades of research on a meromictic, Antarctic lake

(2014) Johanna Laybourn-Parry et al.   POLAR BIOLOGY

Spatiotemporal Variability in Dissolved Organic Matter Composition is More Strongly Related to Bacterioplankton Community Composition than to Metabolic Capability in a Blackwater Estuarine System

(2013) Emma K. Wear et al.   Estuaries and Coasts

Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances

(2013) Ching-Hung Tseng et al.   ISME Journal

Life in the dark: metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

(2013) Sasha G Tetu et al.   ISME Journal

Effects of environmental variation and spatial distance on Bacteria, Archaea and viruses in sub-polar and arctic waters

(2013) Christian Winter et al.   ISME Journal

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

(2013) Sheree Yau et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and functional analysis of proteorhodopsin in marine Flavobacteria

(2012) Susumu Yoshizawa et al.   ENVIRONMENTAL MICROBIOLOGY

The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

(2012) Anja Spang et al.   ENVIRONMENTAL MICROBIOLOGY

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

(2012) Laura Fancello et al.   ISME Journal

Ecology of purple sulfur bacteria in the highly stratified meromictic Lake Shunet (Siberia, Khakassia) in 2002–2009

(2012) D. Yu. Rogozin et al.   MICROBIOLOGY

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

(2012) Simon Roux et al.   PLoS One

Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov.

(2012) Hana Yi et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters

(2012) André M. Comeau et al.   Scientific Reports

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Yellowstone Lake: high-energy geochemistry and rich bacterial diversity

(2011) Scott Clingenpeel et al.   ENVIRONMENTAL MICROBIOLOGY

Global network of specific virus-host interactions in hypersaline environments

(2011) Nina S. Atanasova et al.   ENVIRONMENTAL MICROBIOLOGY

Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome

(2011) Margret E. Berg Miller et al.   ENVIRONMENTAL MICROBIOLOGY

Archaea in Yellowstone Lake

(2011) Jinjun Kan et al.   ISME Journal

Methane sources and sinks in Lake Kivu

(2011) Natacha Pasche et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition

(2011) Isaam Saeed et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Virophage control of antarctic algal host-virus dynamics

(2011) S. Yau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Exploring the viral world through metagenomics

(2011) Karyna Rosario et al.   Current Opinion in Virology

Vertical stratification of physical, chemical and biological components in two saline lakes Shira and Shunet (South Siberia, Russia)

(2010) Andrey G. Degermendzhy et al.   AQUATIC ECOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

(2010) Charmaine Ng et al.   ISME Journal

Microbial community of the chemocline of the meromictic Lake Shunet (Khakassia, Russia) during summer stratification

(2010) D. Yu. Rogozin et al.   MICROBIOLOGY

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

(2010) Luciano A. Marraffini et al.   NATURE REVIEWS GENETICS

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation

(2010) Jack A. Gilbert et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of winter conditions on distributions of anoxic phototrophic bacteria in two meromictic lakes in Siberia, Russia

(2009) D. Y. Rogozin et al.   AQUATIC ECOLOGY

Identification of ribosomal RNA genes in metagenomic fragments

(2009) Ying Huang et al.   BIOINFORMATICS

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

(2009) Erik Kristiansson et al.   BIOINFORMATICS

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

(2009) Hannah Halm et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of viruses in reclaimed water

(2009) Karyna Rosario et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)

(2009) Didier Debroas et al.   ENVIRONMENTAL MICROBIOLOGY

Roles of viruses in the environment

(2009) Forest Rohwer et al.   ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

(2009) Michelle A Allen et al.   ISME Journal

Denitrification as the dominant nitrogen loss process in the Arabian Sea

(2009) B. B. Ward et al.   NATURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea

(2008) Ellen Oelgeschläger et al.   ARCHIVES OF MICROBIOLOGY

"Candidatus Cloacamonas Acidaminovorans": Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division

(2008) E. Pelletier et al.   JOURNAL OF BACTERIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE