The Use of a Mini-Bioreactor Fermentation System as a Reproducible, High-Throughput ex vivo Batch Model of the Distal Colon

CoMiniGut—a small volume in vitro colon model for the screening of gut microbial fermentation processes

(2018) Maria Wiese et al.   PeerJ

Preparation of a standardised faecal slurry for ex-vivo microbiota studies which reduces inter-individual donor bias

(2016) Michelle M. O'Donnell et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Microscale and miniscale fermentation and screening

(2015) Clemens Lattermann et al.   CURRENT OPINION IN BIOTECHNOLOGY

Design and Investigation of PolyFermS In Vitro Continuous Fermentation Models Inoculated with Immobilized Fecal Microbiota Mimicking the Elderly Colon

(2015) Sophie Fehlbaum et al.   PLoS One

Comparative Analysis of Intestinal Tract Models

(2015) C.F. Williams et al.   Annual Review of Food Science and Technology

Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles

(2014) Katherine Kennedy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro

(2014) Massimo Marzorati et al.   BMC MICROBIOLOGY

In Vitro Continuous Fermentation Model (PolyFermS) of the Swine Proximal Colon for Simultaneous Testing on the Same Gut Microbiota

(2014) Sabine A. Tanner et al.   PLoS One

Prebiotic stimulation of human colonic butyrate-producing bacteria and bifidobacteria,in vitro

(2013) Karen P. Scott et al.   FEMS MICROBIOLOGY ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Study of PROBAC product influence on infant microbiota in a single-chamber colonic fermentation model GIS1

(2012) Emanuel Vamanu et al.   ANNALS OF MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

In vitro maintenance of a human proximal colon microbiota using the continuous fermentation system P-ECSIM

(2011) David Feria-Gervasio et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments

(2011) Christopher J Alteri et al.   CURRENT OPINION IN MICROBIOLOGY

Advances and perspectives in in vitro human gut fermentation modeling

(2011) Amanda N. Payne et al.   TRENDS IN BIOTECHNOLOGY

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

(2010) M. C. Rea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS