Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
Published 2014 View Full Article
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Title
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
Authors
Keywords
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Journal
eLife
Volume 3, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2014-12-16
DOI
10.7554/elife.03318
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- (2013) M. S. Fitzsimons et al. GENOME RESEARCH
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- (2013) Emmanuelle Le Chatelier et al. NATURE
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- The CGView Server: a comparative genomics tool for circular genomes
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