XMRF: an R package to fit Markov Networks to high-throughput genetics data

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

(2014) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

A Local Poisson Graphical Model for Inferring Networks From Sequencing Data

(2013) Genevera I. Allen et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Comprehensive molecular characterization of clear cell renal cell carcinoma

(2013)   NATURE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Comprehensive genomic characterization of squamous cell lung cancers

(2012)   NATURE

High-dimensional Ising model selection using ℓ 1 -regularized logistic regression

(2010) Pradeep Ravikumar et al.   ANNALS OF STATISTICS

Stability selection

(2010) Nicolai Meinshausen et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY