Inferring the Source of Transmission with Phylogenetic Data

Modelling tree shape and structure in viral phylodynamics

(2013) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

Genetic Data Provide Evidence for Wind-Mediated Transmission of Highly Pathogenic Avian Influenza

(2012) Rolf J.F. Ypma et al.   JOURNAL OF INFECTIOUS DISEASES

Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

(2012) E. S. Snitkin et al.   Science Translational Medicine

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

(2012) Erik M. Volz et al.   PLoS Computational Biology

Complex Population Dynamics and the Coalescent Under Neutrality

(2011) Erik M. Volz   GENETICS

Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV Prevention Trials Network 052 Trial

(2011) Susan H. Eshleman et al.   JOURNAL OF INFECTIOUS DISEASES

Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

(2011) Jennifer L. Gardy et al.   NEW ENGLAND JOURNAL OF MEDICINE

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

(2011) R. J. F. Ypma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transmission Selects for HIV-1 Strains of Intermediate Virulence: A Modelling Approach

(2011) George Shirreff et al.   PLoS Computational Biology

Determinants of HIV-1 transmission in men who have sex with men: a combined clinical, epidemiological and phylogenetic approach

(2010) Martin Fisher et al.   AIDS

Navigating the future of bacterial molecular epidemiology

(2010) Stephen Baker et al.   CURRENT OPINION IN MICROBIOLOGY

Reconstructing disease outbreaks from genetic data: a graph approach

(2010) T Jombart et al.   HEREDITY

Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences

(2010) D. I. Scaduto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Migration Dynamics Underlie Evolution and Persistence of Human Influenza A (H3N2)

(2010) Trevor Bedford et al.   PLoS Pathogens

Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load

(2010) Samuel Alizon et al.   PLoS Pathogens

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Genetic Diversity in the SIR Model of Pathogen Evolution

(2009) Isabel Gordo et al.   PLoS One

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION