How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis

Revisiting Global Gene Expression Analysis

(2012) Jakob Lovén et al.   CELL

The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin

(2012) Rainer Machné et al.   PLoS One

A Day in the Life of Microcystis aeruginosa Strain PCC 7806 as Revealed by a Transcriptomic Analysis

(2011) Cécile Straub et al.   PLoS One

A high resolution map of a cyanobacterial transcriptome

(2011) Vikram Vijayan et al.   GENOME BIOLOGY

Algorithm-driven Artifacts in median polish summarization of Microarray data

(2010) Federico M Giorgi et al.   BMC BIOINFORMATICS

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering

(2010) Eva Freyhult et al.   BMC BIOINFORMATICS

A comparison on effects of normalisations in the detection of differentially expressed genes

(2009) Monica Chiogna et al.   BMC BIOINFORMATICS

flowClust: a Bioconductor package for automated gating of flow cytometry data

(2009) Kenneth Lo et al.   BMC BIOINFORMATICS

Metabolic Rhythms of the Cyanobacterium Cyanothece sp. ATCC 51142 Correlate with Modeled Dynamics of Circadian Clock

(2009) Jan Červený et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

(2009) Erik R. Zinser et al.   PLoS One

Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

(2009) H. Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oscillations in supercoiling drive circadian gene expression in cyanobacteria

(2009) Vikram Vijayan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures

(2008) Hans Binder et al.   Algorithms for Molecular Biology

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis

(2008) Matthias E. Futschik et al.   BIOINFORMATICS

Short time-series microarray analysis: Methods and challenges

(2008) Xuewei Wang et al.   BMC Systems Biology

Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth

(2008) J. Toepel et al.   JOURNAL OF BACTERIOLOGY

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes

(2008) J. Stockel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Techniques for clustering gene expression data

(2007) G. Kerr et al.   COMPUTERS IN BIOLOGY AND MEDICINE