Feature Selection Methods for Identifying Genetic Determinants of Host Species in RNA Viruses

From single-SNP to wide-locus: genome-wide association studies identifying functionally related genes and intragenic regions in small sample studies

(2013) Knut M Wittkowski et al.   PHARMACOGENOMICS

A genome-wide association study identifies susceptibility loci for Wilms tumor

(2012) Clare Turnbull et al.   NATURE GENETICS

Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community

(2012) Brett Pickett et al.   Viruses-Basel

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

Implication of next-generation sequencing on association studies

(2011) Hoicheong Siu et al.   BMC GENOMICS

Interaction of the Influenza A Virus Polymerase PB2 C-terminal Region with Importin α Isoforms Provides Insights into Host Adaptation and Polymerase Assembly

(2011) Stephane Boivin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Putative amino acid determinants of the emergence of the 2009 influenza A (H1N1) virus in the human population

(2011) D. Meroz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioinformatics challenges for genome-wide association studies

(2010) J. H. Moore et al.   BIOINFORMATICS

PB2 and Hemagglutinin Mutations Are Major Determinants of Host Range and Virulence in Mouse-Adapted Influenza A Virus

(2010) Jihui Ping et al.   JOURNAL OF VIROLOGY

Predicting genetic predisposition in humans: the promise of whole-genome markers

(2010) Gustavo de los Campos et al.   NATURE REVIEWS GENETICS

Identifying genetic markers of adaptation for surveillance of viral host jumps

(2010) Kim M. Pepin et al.   NATURE REVIEWS MICROBIOLOGY

Structures of influenza A proteins and insights into antiviral drug targets

(2010) Kalyan Das et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomewide Association Studies and Assessment of the Risk of Disease

(2010) Teri A. Manolio   NEW ENGLAND JOURNAL OF MEDICINE

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Structural Basis of Preexisting Immunity to the 2009 H1N1 Pandemic Influenza Virus

(2010) R. Xu et al.   SCIENCE

All that glitters is not gold - founder effects complicate associations of flu mutations to disease severity

(2010) Raphael TC Lee et al.   Virology Journal

Role of host-specific amino acids in the pathogenicity of avian H5N1 influenza viruses in mice

(2009) J. H. Kim et al.   JOURNAL OF GENERAL VIROLOGY

Ability to Replicate in the Cytoplasm Predicts Zoonotic Transmission of Livestock Viruses

(2009) Juliet R. C. Pulliam et al.   JOURNAL OF INFECTIOUS DISEASES

Emergence and pandemic potential of swine-origin H1N1 influenza virus

(2009) Gabriele Neumann et al.   NATURE

Extrapolating from sequence—the 2009 H1N1 'swine' influenza virus

(2009) Venkataramanan Soundararajan et al.   NATURE BIOTECHNOLOGY

Adaptive strategies of the influenza virus polymerase for replication in humans

(2009) Andrew Mehle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE

Identifying Changes in Selective Constraints: Host Shifts in Influenza

(2009) Asif U. Tamuri et al.   PLoS Computational Biology

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Avian Influenza A Virus Polymerase Association with Nucleoprotein, but Not Polymerase Assembly, Is Impaired in Human Cells during the Course of Infection

(2008) M.-A. Rameix-Welti et al.   JOURNAL OF VIROLOGY

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

(2008) C. R. Parrish et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS

Interaction of Polymerase Subunit PB2 and NP with Importin α1 Is a Determinant of Host Range of Influenza A Virus

(2008) Gülsah Gabriel et al.   PLoS Pathogens

Quantitative biochemical rationale for differences in transmissibility of 1918 pandemic influenza A viruses

(2008) A. Srinivasan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny and geography predict pathogen community similarity in wild primates and humans

(2008) T. J. Davies et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES