Conserved Substitution Patterns around Nucleosome Footprints in Eukaryotes and Archaea Derive from Frequent Nucleosome Repositioning through Evolution

Low Species Barriers in Halophilic Archaea and the Formation of Recombinant Hybrids

(2012) Adit Naor et al.   CURRENT BIOLOGY

Quantifying Homologous Replacement of Loci between Haloarchaeal Species

(2012) David Williams et al.   Genome Biology and Evolution

Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux

(2012) Erin A. Lynch et al.   PLoS One

Nucleosomes Suppress Spontaneous Mutations Base-Specifically in Eukaryotes

(2012) Xiaoshu Chen et al.   SCIENCE

Controls of Nucleosome Positioning in the Human Genome

(2012) Daniel J. Gaffney et al.   PLoS Genetics

Genome-wide DNA sequence polymorphisms facilitate nucleosome positioning in yeast

(2011) Zhiming Dai et al.   BIOINFORMATICS

Widespread signatures of recent selection linked to nucleosome positioning in the human lineage

(2011) J. G. D. Prendergast et al.   GENOME RESEARCH

Evolution of Nucleosome Occupancy: Conservation of Global Properties and Divergence of Gene-Specific Patterns

(2011) K. Tsui et al.   MOLECULAR AND CELLULAR BIOLOGY

Functional Conservation of Nucleosome Formation Selectively Biases Presumably Neutral Molecular Variation in Yeast Genomes

(2010) Gregory A. Babbitt et al.   Genome Biology and Evolution

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences

(2010) Itay Tirosh et al.   Molecular Systems Biology

Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens

(2010) Sheila M. Reynolds et al.   PLoS Computational Biology

Widespread Compensatory Evolution Conserves DNA-Encoded Nucleosome Organization in Yeast

(2010) Ephraim Kenigsberg et al.   PLoS Computational Biology

G+C content dominates intrinsic nucleosome occupancy

(2009) Desiree Tillo et al.   BMC BIOINFORMATICS

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

(2009) A. Weiner et al.   GENOME RESEARCH

Evidence that Localized Variation in Primate Sequence Divergence Arises from an Influence of Nucleosome Placement on DNA Repair

(2009) H. Ying et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila

(2009) N. D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Nucleosome organization in the Drosophila genome

(2008) Travis N. Mavrich et al.   NATURE

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

Evolutionary footprints of nucleosome positions in yeast

(2008) Stefan Washietl et al.   TRENDS IN GENETICS

The Impact of the Nucleosome Code on Protein-Coding Sequence Evolution in Yeast

(2008) Tobias Warnecke et al.   PLoS Genetics