Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening

Potential Conformational Heterogeneity of p53 Bound to S100B(ββ)

(2013) Chester McDowell et al.   JOURNAL OF MOLECULAR BIOLOGY

Promiscuous binding of extracellular peptides to cell surface class I MHC protein

(2012) H. N. Eisen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epitope-specificity of recombinant antibodies reveals promiscuous peptide-binding properties

(2012) Niclas Olsson et al.   PROTEIN SCIENCE

The binding affinities of proteins interacting with the PDZ domain of PICK1

(2012) Ashini Bolia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Binding of Two Intrinsically Disordered Peptides to a Multi-Specific Protein: A Combined Monte Carlo and Molecular Dynamics Study

(2012) Iskra Staneva et al.   PLoS Computational Biology

Intrinsic disorder in cell signaling and gene transcription

(2011) Agnes Tantos et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Structural and Dynamic Determinants of Protein-Peptide Recognition

(2011) Onur Dagliyan et al.   STRUCTURE

Binding Free Energy Landscape of Domain-Peptide Interactions

(2011) Iskra Staneva et al.   PLoS Computational Biology

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

(2010) N. E. Davey et al.   NUCLEIC ACIDS RESEARCH

Unusual binding interactions in PDZ domain crystal structures help explain binding mechanisms

(2010) Jonathan M. Elkins et al.   PROTEIN SCIENCE

Structure-based prediction of protein-peptide specificity in rosetta

(2010) Christopher A. King et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

T7 phage display as a method of peptide ligand discovery for PDZ domain proteins

(2009) Sudhir C. Sharma et al.   BIOPOLYMERS

All-Atom Monte Carlo Approach to Protein–Peptide Binding

(2009) Iskra Staneva et al.   JOURNAL OF MOLECULAR BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Binding of Small-Molecule Ligands to Proteins: “What You See” Is Not Always “What You Get”

(2009) David L. Mobley et al.   STRUCTURE

Accurate Prediction of Peptide Binding Sites on Protein Surfaces

(2009) Evangelia Petsalaki et al.   PLoS Computational Biology

Mechanism of Fast Peptide Recognition by SH3 Domains

(2008) Mazen Ahmad et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mapping of Two Networks of Residues That Exhibit Structural and Dynamical Changes upon Binding in a PDZ Domain Protein

(2008) Anne Dhulesia et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fuzzy complexes: polymorphism and structural disorder in protein–protein interactions

(2007) Peter Tompa et al.   TRENDS IN BIOCHEMICAL SCIENCES