Phylodynamic Inference and Model Assessment with Approximate Bayesian Computation: Influenza as a Case Study

Canalization of the evolutionary trajectory of the human influenza virus

(2012) Trevor Bedford et al.   BMC BIOLOGY

Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza

(2012) N. Arinaminpathy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Essential epidemiological mechanisms underpinning the transmission dynamics of seasonal influenza

(2011) J. Truscott et al.   Journal of the Royal Society Interface

Bayesian modeling to unmask and predict influenza A/H1N1pdm dynamics in London

(2011) P. J. Birrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

(2011) J. Bahl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

(2011) C. B. Jabara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

(2011) David A. Rasmussen et al.   PLoS Computational Biology

Protocols for sampling viral sequences to study epidemic dynamics

(2010) J. C. Stack et al.   Journal of the Royal Society Interface

A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to influenza

(2010) K. Koelle et al.   Journal of the Royal Society Interface

Statistical inference for noisy nonlinear ecological dynamic systems

(2010) Simon N. Wood   NATURE

Viral shape-shifting: norovirus evasion of the human immune system

(2010) Eric F. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing

(2010) Will Fischer et al.   PLoS One

Global Migration Dynamics Underlie Evolution and Persistence of Human Influenza A (H3N2)

(2010) Trevor Bedford et al.   PLoS Pathogens

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Model criticism based on likelihood-free inference, with an application to protein network evolution

(2009) O. Ratmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influenza seasonality: Lifting the fog

(2009) M. Lipsitch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding the dynamics of rapidly evolving pathogens through modeling the tempo of antigenic change: Influenza as a case study

(2009) Katia Koelle et al.   Epidemics

Long time trends in influenza-like illness and associated determinants in The Netherlands

(2008) F. DIJKSTRA et al.   EPIDEMIOLOGY AND INFECTION

Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London

(2008) S. Cauchemez et al.   Journal of the Royal Society Interface

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the impact of school closure on influenza transmission from Sentinel data

(2008) Simon Cauchemez et al.   NATURE

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

The Global Circulation of Seasonal Influenza A (H3N2) Viruses

(2008) C. A. Russell et al.   SCIENCE

The impact of evolutionary constraints on influenza dynamics

(2008) Julia R. Gog   VACCINE