Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

Atomistic Modeling of Macromolecular Crowding Predicts Modest Increases in Protein Folding and Binding Stability

(2009) Sanbo Qin et al.   BIOPHYSICAL JOURNAL

The Native 3D Organization of Bacterial Polysomes

(2009) Florian Brandt et al.   CELL

Coarse grained simulations of a small peptide: Effects of finite damping and hydrodynamic interactions

(2009) Uwe Winter et al.   JOURNAL OF CHEMICAL PHYSICS

An O(N2) approximation for hydrodynamic interactions in Brownian dynamics simulations

(2009) Tihamér Geyer et al.   JOURNAL OF CHEMICAL PHYSICS

Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins

(2009) Tamara Frembgen-Kesner et al.   Journal of Chemical Theory and Computation

Modulation of Calmodulin Plasticity by the Effect of Macromolecular Crowding

(2009) Dirar Homouz et al.   JOURNAL OF MOLECULAR BIOLOGY

On the Contributions of Diffusion and Thermal Activation to Electron Transfer betweenPhormidium laminosumPlastocyanin and Cytochromef: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Events

(2009) Razif R. Gabdoulline et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

(2009) Y. Zhang et al.   SCIENCE

Single-Molecule Approach to Molecular Biology in Living Bacterial Cells

(2008) X. Sunney Xie et al.   Annual Review of Biophysics

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Protein Nuclear Magnetic Resonance under Physiological Conditions†

(2008) Gary J. Pielak et al.   BIOCHEMISTRY

Influence of Macromolecular Crowding on Protein-Protein Association Rates—a Brownian Dynamics Study

(2008) Grzegorz Wieczorek et al.   BIOPHYSICAL JOURNAL

Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm

(2008) Douglas Ridgway et al.   BIOPHYSICAL JOURNAL

Protein abundance profiling of the Escherichia coli cytosol

(2008) Yasushi Ishihama et al.   BMC GENOMICS

Cytoplasmic Protein Mobility in Osmotically Stressed Escherichia coli

(2008) M. C. Konopka et al.   JOURNAL OF BACTERIOLOGY

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Crowded, cell-like environment induces shape changes in aspherical protein

(2008) D. Homouz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein exchange dynamics at chemoreceptor clusters in Escherichia coli

(2008) S. Schulmeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of mixed macromolecular crowding agents on protein folding

(2008) Huan-Xiang Zhou   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Sampling the Cell with Anomalous Diffusion—The Discovery of Slowness

(2007) Gernot Guigas et al.   BIOPHYSICAL JOURNAL

Protein self-association in crowded protein solutions: A time-resolved fluorescence polarization study

(2004) Silvia Zorrilla et al.   PROTEIN SCIENCE