Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability

Lineage-specific transcription factors and the evolution of gene regulatory networks

(2010) K. Nowick et al.   Briefings in Functional Genomics

Predicting embryonic patterning using mutual entropy fitness and in silico evolution

(2010) P. Francois et al.   DEVELOPMENT

Optimizing information flow in small genetic networks. II. Feed-forward interactions

(2010) Aleksandra M. Walczak et al.   PHYSICAL REVIEW E

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

(2009) Kirsten HWJ ten Tusscher et al.   BMC EVOLUTIONARY BIOLOGY

EXTINCTIONS IN HETEROGENEOUS ENVIRONMENTS AND THE EVOLUTION OF MODULARITY

(2009) Nadav Kashtan et al.   EVOLUTION

Segmentation, metamerism and the Cambrian explosion

(2009) Juan Pablo Couso   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Looking at the origin of phenotypic variation from pattern formation gene networks

(2009) Isaac Salazar-Ciudad   JOURNAL OF BIOSCIENCES

On the basic computational structure of gene regulatory networks

(2009) Carlos Rodríguez-Caso et al.   Molecular BioSystems

From ABC genes to regulatory networks, epigenetic landscapes and flower morphogenesis: Making biological sense of theoretical approaches

(2009) Elena R. Alvarez-Buylla et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Signaling Gradients during Paraxial Mesoderm Development

(2009) A. Aulehla et al.   Cold Spring Harbor Perspectives in Biology

An Analytically Solvable Model for Rapid Evolution of Modular Structure

(2009) Nadav Kashtan et al.   PLoS Computational Biology

Uncoupling Time and Space in the Collinear Regulation of Hox Genes

(2009) Patrick Tschopp et al.   PLoS Genetics

Understanding biological functions through molecular networks

(2008) Jing-Dong Jackie Han   CELL RESEARCH

And Lophotrochozoa makes three: Notch/Hes signaling in annelid segmentation

(2008) Ajna S. Rivera et al.   DEVELOPMENT GENES AND EVOLUTION

EVOLUTION OF EVOLVABILITY IN A DEVELOPMENTAL MODEL

(2008) Jeremy Draghi et al.   EVOLUTION

Segmenting the fly embryo: logical analysis of the role of the Segment Polarity cross-regulatory module

(2008) Lucas Sanchez et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The evolutionary dynamics of evolvability in a gene network model

(2008) J. DRAGHI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Modeling the segmentation clock as a network of coupled oscillations in the Notch, Wnt and FGF signaling pathways

(2008) Albert Goldbeter et al.   JOURNAL OF THEORETICAL BIOLOGY

Network Evolution of Body Plans

(2008) Koichi Fujimoto et al.   PLoS One

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

(2008) J. I. Pueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments

(2008) Merav Parter et al.   PLoS Computational Biology

Robustness and evolvability: a paradox resolved

(2007) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES