Lineage-specific transcription factors and the evolution of gene regulatory networks

The life and death of gene families

(2009) Jeffery P. Demuth et al.   BIOESSAYS

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

(2009) Kirsten HWJ ten Tusscher et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive evolution of young gene duplicates in mammals

(2009) M. V. Han et al.   GENOME RESEARCH

The organization of the transcriptional network in specific neuronal classes

(2009) Kellen D Winden et al.   Molecular Systems Biology

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

(2009) Raja Jothi et al.   Molecular Systems Biology

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain

(2009) Katja Nowick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks

(2009) A. J. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptive Evolution in Zinc Finger Transcription Factors

(2009) Ryan O. Emerson et al.   PLoS Genetics

Evolutionary rates and centrality in the yeast gene regulatory network

(2009) Richard Jovelin et al.   GENOME BIOLOGY

Evolution of C2H2-zinc finger genes and subfamilies in mammals: Species-specific duplication and loss of clusters, genes and effector domains

(2008) Hamsa D Tadepally et al.   BMC EVOLUTIONARY BIOLOGY

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

High Nucleotide Divergence in Developmental Regulatory Genes Contrasts With the Structural Elements of Olfactory Pathways in Caenorhabditis

(2008) R. Jovelin et al.   GENETICS

Timing of Genome Duplications Relative to the Origin of the Vertebrates: Did Cyclostomes Diverge before or after?

(2008) S. Kuraku et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary origins of human apoptosis and genome-stability gene networks

(2008) Mauro A. A. Castro et al.   NUCLEIC ACIDS RESEARCH

Evolutionarily Conserved Transcriptional Co-Expression Guiding Embryonic Stem Cell Differentiation

(2008) Yu Sun et al.   PLoS One

Regulatory logic of neuronal diversity: Terminal selector genes and selector motifs

(2008) O. Hobert   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Choose your partners: dimerization in eukaryotic transcription factors

(2008) Grigoris D. Amoutzias et al.   TRENDS IN BIOCHEMICAL SCIENCES

Evolution of Evolvability in Gene Regulatory Networks

(2008) Anton Crombach et al.   PLoS Computational Biology

Evolution of a Core Gene Network for Skeletogenesis in Chordates

(2008) Jochen Hecht et al.   PLoS Genetics

Spontaneous emergence of modularity in cellular networks

(2007) R. V Sole et al.   Journal of the Royal Society Interface