A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

Exploring the Molecular Design of Protein Interaction Sites with Molecular Dynamics Simulations and Free Energy Calculations†

(2008) Shide Liang et al.   BIOCHEMISTRY

Algorithm for backrub motions in protein design

(2008) I. Georgiev et al.   BIOINFORMATICS

Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics

(2008) Nils-Alexander Lakomek et al.   JOURNAL OF BIOMOLECULAR NMR

A Simple Model of Backbone Flexibility Improves Modeling of Side-chain Conformational Variability

(2008) Gregory D. Friedland et al.   JOURNAL OF MOLECULAR BIOLOGY

Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles

(2008) Sidhartha Chaudhury et al.   JOURNAL OF MOLECULAR BIOLOGY

Backrub-Like Backbone Simulation Recapitulates Natural Protein Conformational Variability and Improves Mutant Side-Chain Prediction

(2008) Colin A. Smith et al.   JOURNAL OF MOLECULAR BIOLOGY

BIOCHEMISTRY: How Do Proteins Interact?

(2008) D. D. Boehr et al.   SCIENCE

Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution

(2008) O. F. Lange et al.   SCIENCE

Prediction of Protein-Protein Interface Sequence Diversity Using Flexible Backbone Computational Protein Design

(2008) Elisabeth L. Humphris et al.   STRUCTURE

Evaluating Rotational Diffusion from Protein MD Simulations†

(2007) Vance Wong et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A de novo redesign of the WW domain

(2003) Christina M. Kraemer-Pecore et al.   PROTEIN SCIENCE

Thoroughly sampling sequence space: Large-scale protein design of structural ensembles

(2002) Stefan M. Larson et al.   PROTEIN SCIENCE