Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way

Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: Potential implications to evolution and to protein folding

(2010) Daniel Fischer et al.   PROTEIN SCIENCE

'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces

(2009) J. Li et al.   BIOINFORMATICS

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy

(2009) Nurcan Tuncbag et al.   BIOINFORMATICS

Thermodynamic and Structural Investigation of Bispecificity in Protein–Protein Interactions

(2009) Huaying Zhao et al.   JOURNAL OF MOLECULAR BIOLOGY

Moonlighting proteins—an update

(2009) Constance J. Jeffery   Molecular BioSystems

Protein promiscuity and its implications for biotechnology

(2009) Irene Nobeli et al.   NATURE BIOTECHNOLOGY

Fast screening of protein surfaces using geometric invariant fingerprints

(2009) S. Yin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

(2009) Andrew C. Wallace et al.   PROTEIN SCIENCE

Exploring functional roles of multibinding protein interfaces

(2009) Manoj Tyagi et al.   PROTEIN SCIENCE

Evolutionary conservation in multiple faces of protein interaction

(2009) Yoon Sup Choi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Energetic determinants of protein binding specificity: Insights into protein interaction networks

(2009) Pablo Carbonell et al.   PROTEOMICS

Tradeoff Between Stability and Multispecificity in the Design of Promiscuous Proteins

(2009) Menachem Fromer et al.   PLoS Computational Biology

Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites

(2008) R. Najmanovich et al.   BIOINFORMATICS

Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations

(2008) Guillaume Launay et al.   BMC BIOINFORMATICS

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

(2008) Ofir Goldenberg et al.   NUCLEIC ACIDS RESEARCH

MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions

(2008) A. Shulman-Peleg et al.   NUCLEIC ACIDS RESEARCH

Alignment of Non-Covalent Interactions at Protein-Protein Interfaces

(2008) Hongbo Zhu et al.   PLoS One

Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association

(2008) C.-e. A. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions

(2008) Ryoichi Minai et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The specificity of cross-reactivity: Promiscuous antibody binding involves specific hydrogen bonds rather than nonspecific hydrophobic stickiness

(2003) Leo C. James et al.   PROTEIN SCIENCE