Considerations for resting state functional MRI and functional connectivity studies in rodents

Mapping Functional Connectivity Using Cerebral Blood Flow in the Mouse Brain

(2015) Karla M Bergonzi et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Stress-induced alterations in large-scale functional networks of the rodent brain

(2015) Marloes J.A.G. Henckens et al.   NEUROIMAGE

Functional connectivity in prenatally stressed rats with and without maternal treatment with ladostigil, a brain-selective monoamine oxidase inhibitor

(2014) G. Goelman et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

The evolution of the vertebrate cerebellum: absence of a proliferative external granule layer in a non-teleost ray-finned fish

(2014) Thomas Butts et al.   EVOLUTION & DEVELOPMENT

Dynamic connectivity states estimated from resting fMRI Identify differences among Schizophrenia, bipolar disorder, and healthy control subjects

(2014) Barnaly Rashid et al.   Frontiers in Human Neuroscience

Resting-State Functional Connectivity Changes in Aging apoE4 and apoE-KO Mice

(2014) V. Zerbi et al.   JOURNAL OF NEUROSCIENCE

Neuroplasticity to a single-episode traumatic stress revealed by resting-state fMRI in awake rats

(2014) Zhifeng Liang et al.   NEUROIMAGE

Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns

(2014) Joanes Grandjean et al.   NEUROIMAGE

Investigating intrinsic connectivity networks using simultaneous BOLD and CBF measurements

(2014) S.D. Mayhew et al.   NEUROIMAGE

Pharmacological insight into neurotransmission origins of resting-state functional connectivity: α2-adrenergic agonist vs antagonist

(2014) Fatima A. Nasrallah et al.   NEUROIMAGE

Waxholm Space atlas of the Sprague Dawley rat brain

(2014) Eszter A. Papp et al.   NEUROIMAGE

Specificity of stimulus-evoked fMRI responses in the mouse: The influence of systemic physiological changes associated with innocuous stimulation under four different anesthetics

(2014) Aileen Schroeter et al.   NEUROIMAGE

Time-dependent effects of isoflurane and dexmedetomidine on functional connectivity, spectral characteristics, and spatial distribution of spontaneous BOLD fluctuations

(2014) Matthew Evan Magnuson et al.   NMR IN BIOMEDICINE

Contribution of the Resting-State Functional Connectivity of the Contralesional Primary Sensorimotor Cortex to Motor Recovery after Subcortical Stroke

(2014) Huijuan Xu et al.   PLoS One

Large-scale topology and the default mode network in the mouse connectome

(2014) James M. Stafford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aberrant resting-state functional connectivity in a genetic rat model of depression

(2014) Kathleen A. Williams et al.   PSYCHIATRY RESEARCH-NEUROIMAGING

Rodent Models of Depression: Neurotrophic and Neuroinflammatory Biomarkers

(2014) Mikhail Stepanichev et al.   Biomed Research International

Increased resting functional connectivity in spike-wave epilepsy in WAG/Rij rats

(2013) Asht M. Mishra et al.   EPILEPSIA

The resting-state neurovascular coupling relationship: rapid changes in spontaneous neural activity in the somatosensory cortex are associated with haemodynamic fluctuations that resemble stimulus-evoked haemodynamics

(2013) Michael Bruyns-Haylett et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Dynamic functional connectomics signatures for characterization and differentiation of PTSD patients

(2013) Xiang Li et al.   HUMAN BRAIN MAPPING

Anesthesia and Other Considerations for in Vivo Imaging of Small Animals

(2013) I. J. Hildebrandt et al.   ILAR JOURNAL

Functional connectivity fMRI in mouse brain at 7T using isoflurane

(2013) David N. Guilfoyle et al.   JOURNAL OF NEUROSCIENCE METHODS

Different anesthesia regimes modulate the functional connectivity outcome in mice

(2013) Elisabeth Jonckers et al.   MAGNETIC RESONANCE IN MEDICINE

The contribution of electrophysiology to functional connectivity mapping

(2013) Marieke L. Schölvinck et al.   NEUROIMAGE

Mapping thalamocortical networks in rat brain using resting-state functional connectivity

(2013) Zhifeng Liang et al.   NEUROIMAGE

Infraslow LFP correlates to resting-state fMRI BOLD signals

(2013) Wen-Ju Pan et al.   NEUROIMAGE

Clinical applications of the functional connectome

(2013) F. Xavier Castellanos et al.   NEUROIMAGE

Resting-state fMRI confounds and cleanup

(2013) Kevin Murphy et al.   NEUROIMAGE

Dynamic functional connectivity: Promise, issues, and interpretations

(2013) R. Matthew Hutchison et al.   NEUROIMAGE

Neural correlates of time-varying functional connectivity in the rat

(2013) Garth John Thompson et al.   NEUROIMAGE

Hemodynamic and electrophysiological spontaneous low-frequency oscillations in the cortex: Directional influences revealed by Granger causality

(2013) Liangming Huang et al.   NEUROIMAGE

Distributed BOLD and CBV-weighted resting-state networks in the mouse brain

(2013) Francesco Sforazzini et al.   NEUROIMAGE

Quasi-periodic patterns (QPP): Large-scale dynamics in resting state fMRI that correlate with local infraslow electrical activity

(2013) Garth John Thompson et al.   NEUROIMAGE

Neural correlate of resting-state functional connectivity under α2 adrenergic receptor agonist, medetomidine

(2013) Fatima A Nasrallah et al.   NEUROIMAGE

Reliability and spatial specificity of rat brain sensorimotor functional connectivity networks are superior under sedation compared with general anesthesia

(2013) Daniel Kalthoff et al.   NMR IN BIOMEDICINE

Functional MRI of long-term potentiation: imaging network plasticity

(2013) E. Alvarez-Salvado et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Quantitative basis for neuroimaging of cortical laminae with calibrated functional MRI

(2013) P. Herman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Fledgling pathoconnectomics of psychiatric disorders

(2013) Mikail Rubinov et al.   TRENDS IN COGNITIVE SCIENCES

The Change of Functional Connectivity Specificity in Rats Under Various Anesthesia Levels and its Neural Origin

(2012) Xiao Liu et al.   BRAIN TOPOGRAPHY

Voxel Scale Complex Networks of Functional Connectivity in the Rat Brain: Neurochemical State Dependence of Global and Local Topological Properties

(2012) Adam J. Schwarz et al.   Computational and Mathematical Methods in Medicine

Effects of the α2-adrenergic receptor agonist dexmedetomidine on neural, vascular and BOLD fMRI responses in the somatosensory cortex

(2012) Mitsuhiro Fukuda et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Haloperidol modulates midbrain-prefrontal functional connectivity in the rat brain

(2012) Natalia Gass et al.   EUROPEAN NEUROPSYCHOPHARMACOLOGY

Resting-state networks show dynamic functional connectivity in awake humans and anesthetized macaques

(2012) R. Matthew Hutchison et al.   HUMAN BRAIN MAPPING

Short-time windows of correlation between large-scale functional brain networks predict vigilance intraindividually and interindividually

(2012) Garth John Thompson et al.   HUMAN BRAIN MAPPING

Advancing schizophrenia drug discovery: optimizing rodent models to bridge the translational gap

(2012) Judith Pratt et al.   NATURE REVIEWS DRUG DISCOVERY

Periodic changes in fMRI connectivity

(2012) Daniel A. Handwerker et al.   NEUROIMAGE

Tracking dynamic resting-state networks at higher frequencies using MR-encephalography

(2012) Hsu-Lei Lee et al.   NEUROIMAGE

Rat brains also have a default mode network

(2012) H. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monkey in the middle: why non-human primates are needed to bridge the gap in resting-state investigations

(2012) R. Matthew Hutchison et al.   Frontiers in Neuroanatomy

Brain Energy Metabolism: Focus on Astrocyte-Neuron Metabolic Cooperation

(2011) Mireille Bélanger et al.   Cell Metabolism

Where fMRI and Electrophysiology Agree to Disagree: Corticothalamic and Striatal Activity Patterns in the WAG/Rij Rat

(2011) A. M. Mishra et al.   JOURNAL OF NEUROSCIENCE

Default Mode of Brain Function in Monkeys

(2011) D. Mantini et al.   JOURNAL OF NEUROSCIENCE

Neurovascular coupling is brain region-dependent

(2011) Ian M. Devonshire et al.   NEUROIMAGE

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

(2011) Jonathan D. Power et al.   NEUROIMAGE

Resting functional connectivity between the hemispheres in childhood absence epilepsy

(2011) X. Bai et al.   NEUROLOGY

Functional Connectivity fMRI of the Rodent Brain: Comparison of Functional Connectivity Networks in Rat and Mouse

(2011) Elisabeth Jonckers et al.   PLoS One

Default-Mode-Like Network Activation in Awake Rodents

(2011) Jaymin Upadhyay et al.   PLoS One

Robust Reproducible Resting State Networks in the Awake Rodent Brain

(2011) Lino Becerra et al.   PLoS One

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(2011) Pedro Antonio Valdés-Hernández   Frontiers in Neuroinformatics

Technical and Conceptual Considerations for Performing and Interpreting Functional MRI Studies in Awake Rats

(2011) Marcelo Febo   Frontiers in Psychiatry

Evaluation of data-driven network analysis approaches for functional connectivity MRI

(2010) Shella D. Keilholz et al.   Brain Structure & Function

Functional connectivity in blood oxygenation level-dependent and cerebral blood volume-weighted resting state functional magnetic resonance imaging in the rat brain

(2010) Matthew Magnuson et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Functional Networks in the Anesthetized Rat Brain Revealed by Independent Component Analysis of Resting-State fMRI

(2010) R. Matthew Hutchison et al.   JOURNAL OF NEUROPHYSIOLOGY

Recovery of Sensorimotor Function after Experimental Stroke Correlates with Restoration of Resting-State Interhemispheric Functional Connectivity

(2010) M. P. A. van Meer et al.   JOURNAL OF NEUROSCIENCE

Mapping resting-state brain networks in conscious animals

(2010) Nanyin Zhang et al.   JOURNAL OF NEUROSCIENCE METHODS

Comparison of α-chloralose, medetomidine and isoflurane anesthesia for functional connectivity mapping in the rat

(2010) Kathleen A. Williams et al.   MAGNETIC RESONANCE IMAGING

Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI

(2010) Steen Moeller et al.   MAGNETIC RESONANCE IN MEDICINE

The effect of different anesthetics on neurovascular coupling

(2010) Maria Angela Franceschini et al.   NEUROIMAGE

Spatiotemporal dynamics of low frequency BOLD fluctuations in rats and humans

(2010) Waqas Majeed et al.   NEUROIMAGE

Functional connectivity in the rat at 11.7T: Impact of physiological noise in resting state fMRI

(2010) Daniel Kalthoff et al.   NEUROIMAGE

Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging

(2010) David A. Feinberg et al.   PLoS One

Neural basis of global resting-state fMRI activity

(2010) M. L. Scholvinck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Effect of Clonidine Infusion on Distribution of Regional Cerebral Blood Flow in Volunteers

(2009) Vincent Bonhomme et al.   ANESTHESIA AND ANALGESIA

Effect of Dexmedetomidine on Cerebral Blood Flow Velocity, Cerebral Metabolic Rate, and Carbon Dioxide Response in Normal Humans

(2009) John C. Drummond et al.   ANESTHESIOLOGY

Functional segmentation of the brain cortex using high model order group PICA

(2009) Vesa Kiviniemi et al.   HUMAN BRAIN MAPPING

Spatiotemporal dynamics of low frequency fluctuations in BOLD fMRI of the rat

(2009) Waqas Majeed et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

The Global Signal and Observed Anticorrelated Resting State Brain Networks

(2009) Michael D. Fox et al.   JOURNAL OF NEUROPHYSIOLOGY

Registering and analyzing rat fMRI data in the stereotaxic framework by exploiting intrinsic anatomical features

(2009) Hanbing Lu et al.   MAGNETIC RESONANCE IMAGING

A protocol for use of medetomidine anesthesia in rats for extended studies using task-induced BOLD contrast and resting-state functional connectivity

(2009) Christopher P. Pawela et al.   NEUROIMAGE

Interhemispheric neuroplasticity following limb deafferentation detected by resting-state functional connectivity magnetic resonance imaging (fcMRI) and functional magnetic resonance imaging (fMRI)

(2009) Christopher P. Pawela et al.   NEUROIMAGE

How does an fMRI voxel sample the neuronal activity pattern: Compact-kernel or complex spatiotemporal filter?

(2009) Nikolaus Kriegeskorte et al.   NEUROIMAGE

Time–frequency dynamics of resting-state brain connectivity measured with fMRI

(2009) Catie Chang et al.   NEUROIMAGE

The Brain's Default Network

(2008) Randy L. Buckner et al.   Annals of the New York Academy of Sciences

Understanding anesthesia through functional imaging

(2008) Ramachandran Ramani et al.   Current Opinion in Anesthesiology

Anesthesia for functional neurosurgery: the role of dexmedetomidine

(2008) Irene Rozet   Current Opinion in Anesthesiology

Neuronal correlates of spontaneous fluctuations in fMRI signals in monkey visual cortex: Implications for functional connectivity at rest

(2008) Amir Shmuel et al.   HUMAN BRAIN MAPPING

Resting-state functional connectivity of the rat brain

(2008) Christopher P. Pawela et al.   MAGNETIC RESONANCE IN MEDICINE

Interhemispheric correlations of slow spontaneous neuronal fluctuations revealed in human sensory cortex

(2008) Yuval Nir et al.   NATURE NEUROSCIENCE

Mapping resting-state functional connectivity using perfusion MRI

(2008) Kai-Hsiang Chuang et al.   NEUROIMAGE

The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced?

(2008) Kevin Murphy et al.   NEUROIMAGE

Electrophysiological correlates of the brain's intrinsic large-scale functional architecture

(2008) B. J. He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal lobe and “default” hemodynamic brain modes discriminate between schizophrenia and bipolar disorder

(2007) Vince D. Calhoun et al.   HUMAN BRAIN MAPPING

Fine Detail of Neurovascular Coupling Revealed by Spatiotemporal Analysis of the Hemodynamic Response to Single Whisker Stimulation in Rat Barrel Cortex

(2007) J. Berwick et al.   JOURNAL OF NEUROPHYSIOLOGY

The intrinsic functional organization of the brain is altered in autism

(2007) Daniel P. Kennedy et al.   NEUROIMAGE

BOLD study of stimulation-induced neural activity and resting-state connectivity in medetomidine-sedated rat

(2007) Fuqiang Zhao et al.   NEUROIMAGE