Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning

Methane Production in Dairy Cows Correlates with Rumen Methanogenic and Bacterial Community Structure

(2017) Rebecca Danielsson et al.   Frontiers in Microbiology

Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves

(2017) S. J. Meale et al.   Scientific Reports

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation

(2017) Kimberly A. Dill-McFarland et al.   Scientific Reports

Development and physiology of the rumen and the lower gut: Targets for improving gut health 1

(2016) Michael A. Steele et al.   JOURNAL OF DAIRY SCIENCE

Characteristics of dairy cows with a greater or lower risk of subacute ruminal acidosis: Volatile fatty acid absorption, rumen digestion, and expression of genes in rumen epithelial cells

(2016) X. Gao et al.   JOURNAL OF DAIRY SCIENCE

Changes in the intestinal bacterial community, short-chain fatty acid profile, and intestinal development of preweaned Holstein calves. 2. Effects of gastrointestinal site and age 1

(2016) J.J. Castro et al.   JOURNAL OF DAIRY SCIENCE

Prebiotics and Bioactive Milk Fractions Affect Gut Development, Microbiota, and Neurotransmitter Expression in Piglets

(2016) Kirsten Berding et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Effects of dietary forage and calf starter on ruminal pH and transcriptomic adaptation of the rumen epithelium in Holstein calves during the weaning transition

(2016) Yo-Han Kim et al.   PHYSIOLOGICAL GENOMICS

Effects of Early Intervention with Sodium Butyrate on Gut Microbiota and the Expression of Inflammatory Cytokines in Neonatal Piglets

(2016) Jumei Xu et al.   PLoS One

Development of Ruminal and Fecal Microbiomes Are Affected by Weaning But Not Weaning Strategy in Dairy Calves

(2016) Sarah J. Meale et al.   Frontiers in Microbiology

Effects of Dietary Forage and Calf Starter Diet on Ruminal pH and Bacteria in Holstein Calves during Weaning Transition

(2016) Yo-Han Kim et al.   Frontiers in Microbiology

Butyrate upregulates endogenous host defense peptides to enhance disease resistance in piglets via histone deacetylase inhibition

(2016) Haitao Xiong et al.   Scientific Reports

Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs

(2016) Weimin Wang et al.   Scientific Reports

RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition1,2

(2015) J. L. Firkins et al.   JOURNAL OF ANIMAL SCIENCE

Global trends in antimicrobial use in food animals

(2015) Thomas P. Van Boeckel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manipulating rumen microbiome and fermentation through interventions during early life: a review

(2015) David R. Yáñez-Ruiz et al.   Frontiers in Microbiology

Illumina MiSeq Phylogenetic Amplicon Sequencing Shows a Large Reduction of an Uncharacterised Succinivibrionaceae and an Increase of the Methanobrevibacter gottschalkii Clade in Feed Restricted Cattle

(2015) Matthew Sean McCabe et al.   PLoS One

Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?

(2015) Jolien B. Veneman et al.   PLoS One

Fermentable non-starch polysaccharides increases the abundance of Bacteroides–Prevotella–Porphyromonas in ileal microbial community of growing pigs

(2014) E. Ivarsson et al.   Animal

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Links between diet, gut microbiota composition and gut metabolism

(2014) Harry J. Flint et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential

(2013) M. Rey et al.   JOURNAL OF APPLIED MICROBIOLOGY

Effect of calf starter feeding on gut microbial diversity and expression of genes involved in host immune responses and tight junctions in dairy calves during weaning transition

(2013) Nilusha Malmuthuge et al.   JOURNAL OF DAIRY SCIENCE

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Fecal Microbial Diversity in Pre-Weaned Dairy Calves as Described by Pyrosequencing of Metagenomic 16S rDNA. Associations of Faecalibacterium Species with Health and Growth

(2013) Georgios Oikonomou et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Gastrointestinal Tract Microbiota and Probiotics in Production Animals

(2013) Carl J. Yeoman et al.   Annual Review of Animal Biosciences

Methanogens and Methanogenesis in the Rumens and Ceca of Lambs Fed Two Different High-Grain-Content Diets

(2012) M. Popova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of sodium butyrate and salinomycin upon intestinal microbiota, mucosal morphology and performance of broiler chickens

(2012) Jan Czerwiński et al.   ARCHIVES OF ANIMAL NUTRITION

Perturbation Dynamics of the Rumen Microbiota in Response to Exogenous Butyrate

(2012) Robert W. Li et al.   PLoS One

Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer

(2012) Weiguang Chen et al.   PLoS One

Characterization of Phascolarctobacterium succinatutens sp. nov., an Asaccharolytic, Succinate-Utilizing Bacterium Isolated from Human Feces

(2011) Yohei Watanabe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RUMINANT NUTRITION SYMPOSIUM: Productivity, digestion, and health responses to hindgut acidosis in ruminants1

(2011) T. F. Gressley et al.   JOURNAL OF ANIMAL SCIENCE

Effect of method of delivery of sodium butyrate on rumen development in newborn calves

(2011) P. Górka et al.   JOURNAL OF DAIRY SCIENCE

Is rumen development in newborn calves affected by different liquid feeds and small intestine development?

(2011) P. Górka et al.   JOURNAL OF DAIRY SCIENCE

Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies

(2011) P. B. Pope et al.   SCIENCE

Gluconeogenesis in dairy cows: The secret of making sweet milk from sour dough

(2010) Jörg R. Aschenbach et al.   IUBMB LIFE

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

From the gut to the peripheral tissues: the multiple effects of butyrate

(2010) P. Guilloteau et al.   NUTRITION RESEARCH REVIEWS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sodium-butyrate as a growth promoter in milk replacer formula for young calves

(2009) P. Guilloteau et al.   JOURNAL OF DAIRY SCIENCE

BOARD-INVITED REVIEW: Recent advances in biohydrogenation of unsaturated fatty acids within the rumen microbial ecosystem1

(2007) T. C. Jenkins et al.   JOURNAL OF ANIMAL SCIENCE