Using Two-dimensional Principal Component Analysis and Rotation Forest for Prediction of Protein-Protein Interactions

RFDT: A Rotation Forest-based Predictor for Predicting Drug-Target Interactions Using Drug Structure and Protein Sequence Information

(2018) Lei Wang et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Advancing the prediction accuracy of protein-protein interactions by utilizing evolutionary information from position-specific scoring matrix and ensemble classifier

(2017) Lei Wang et al.   JOURNAL OF THEORETICAL BIOLOGY

Construction of reliable protein–protein interaction networks using weighted sparse representation based classifier with pseudo substitution matrix representation features

(2016) Yu-An Huang et al.   NEUROCOMPUTING

Ens-PPI: A Novel Ensemble Classifier for Predicting the Interactions of Proteins Using Autocovariance Transformation from PSSM

(2016) Zhen-Guo Gao et al.   Biomed Research International

A Highly Efficient Approach to Protein Interactome Mapping Based on Collaborative Filtering Framework

(2015) Xin Luo et al.   Scientific Reports

A MapReduce based parallel SVM for large-scale predicting protein–protein interactions

(2014) Zhu-Hong You et al.   NEUROCOMPUTING

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

(2013) Zhu-Hong You et al.   BMC BIOINFORMATICS

QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions

(2013) Bin Liu et al.   BMC GENOMICS

Erratum: Corrigendum: Structure-based prediction of protein–protein interactions on a genome-wide scale

(2013) Qiangfeng Cliff Zhang et al.   NATURE

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

t-LSE: A Novel Robust Geometric Approach for Modeling Protein-Protein Interaction Networks

(2013) Lin Zhu et al.   PLoS One

Assessing and predicting protein interactions by combining manifold embedding with multiple information integration

(2012) Ying-Ke Lei et al.   BMC BIOINFORMATICS

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network

(2010) Zhu-Hong You et al.   BMC BIOINFORMATICS

Improved Method for Predicting π-Turns in Proteins Using a Two-Stage Classifier

(2010) Jun-Feng Xia et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors

(2010) Lei Yang et al.   PROTEIN AND PEPTIDE LETTERS

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens

(2008) Zheng Yin et al.   BMC BIOINFORMATICS

Gene function prediction using labeled and unlabeled data

(2008) Xing-Ming Zhao et al.   BMC BIOINFORMATICS

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

(2008) Laura Trinkle-Mulcahy et al.   JOURNAL OF CELL BIOLOGY

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

Protein domain annotation with integration of heterogeneous information sources

(2008) Xing-Ming Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Specific interactions for ab initio folding of protein terminal regions with secondary structures

(2008) Yuedong Yang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS