Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States

Reverse gyrase is essential for microbial growth at 95 °C

(2017) Gina L. Lipscomb et al.   EXTREMOPHILES

Hyperplectonemes: A Higher Order Compact and Dynamic DNA Self-Organization

(2017) Aleksandre Japaridze et al.   NANO LETTERS

Spatial confinement induces hairpins in nicked circular DNA

(2017) Aleksandre Japaridze et al.   NUCLEIC ACIDS RESEARCH

Pore translocation of knotted DNA rings

(2017) Antonio Suma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward an Effective Control of DNA’s Submolecular Conformation on a Surface

(2016) Aleksandre Japaridze et al.   MACROMOLECULES

Preparation of Well-Defined DNA Samples for Reproducible Nanospectroscopic Measurements

(2016) Ewelina Lipiec et al.   Small

Upstream Binding of Idling RNA Polymerase Modulates Transcription Initiation from a Nearby Promoter

(2015) Veneta Gerganova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields

(2015) Irina O. Vvedenskaya et al.   MOLECULAR CELL

Coexistence of Twisted, Plectonemic, and Melted DNA in Small Topological Domains

(2014) He Meng et al.   BIOPHYSICAL JOURNAL

Single molecule approaches to monitor the recognition and resection of double-stranded DNA breaks during homologous recombination

(2014) Carolina Carrasco et al.   DNA REPAIR

Genome stability: recent insights in the topoisomerase reverse gyrase and thermophilic DNA alkyltransferase

(2014) Antonella Vettone et al.   EXTREMOPHILES

Chromatin Structure and Dynamics in Hot Environments: Architectural Proteins and DNA Topoisomerases of Thermophilic Archaea

(2014) Valeria Visone et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reverse gyrase—recent advances and current mechanistic understanding of positive DNA supercoiling

(2014) Pavel Lulchev et al.   NUCLEIC ACIDS RESEARCH

New Mechanistic and Functional Insights into DNA Topoisomerases

(2013) Stefanie Hartman Chen et al.   Annual Review of Biochemistry

Supercoiling in DNA and chromatin

(2013) Nick Gilbert et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Condensins: universal organizers of chromosomes with diverse functions

(2012) T. Hirano   GENES & DEVELOPMENT

Chiral electrostatics breaks the mirror symmetry of DNA supercoiling

(2012) R Cortini et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Positive supercoiling in thermophiles and mesophiles: of the good and evil

(2011) Anna Valenti et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

TopR2, the Second Reverse Gyrase of Sulfolobus solfataricus, Exhibits Unusual Properties

(2011) Anna Bizard et al.   JOURNAL OF MOLECULAR BIOLOGY

How To Prepare Reproducible, Homogeneous, and Hydrolytically Stable Aminosilane-Derived Layers on Silica

(2011) Mojun Zhu et al.   LANGMUIR

All tangled up: how cells direct, manage and exploit topoisomerase function

(2011) Seychelle M. Vos et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Selective binding of tumor suppressor p53 protein to topologically constrained DNA: Modulation by intercalative drugs

(2010) Hana Pivoňková et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Cellular Strategies for Regulating DNA Supercoiling: A Single-Molecule Perspective

(2010) Daniel A. Koster et al.   CELL

Preparation of DNA and nucleoprotein samples for AFM imaging

(2010) Yuri L. Lyubchenko   MICRON

Differential stability of DNA crossovers in solution mediated by divalent cations

(2010) Péter Várnai et al.   NUCLEIC ACIDS RESEARCH

Helical Chirality: a Link between Local Interactions and Global Topology in DNA

(2010) Youri Timsit et al.   PLoS One

Reverse gyrase and genome stability in hyperthermophilic organisms

(2009) Giuseppe Perugino et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Centromeric Nucleosomes Induce Positive DNA Supercoils

(2009) Takehito Furuyama et al.   CELL

Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine †

(2008) Anna Valenti et al.   NUCLEIC ACIDS RESEARCH

DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

(2008) Allyn J. Schoeffler et al.   QUARTERLY REVIEWS OF BIOPHYSICS