Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Authors
Keywords
-
Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-11-27
DOI
10.1038/s41598-017-17132-4
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Fungal microbiota dysbiosis in IBD
- (2016) Harry Sokol et al. GUT
- Comparison of the gut microbial community between obese and lean peoples using 16S gene sequencing in a Japanese population
- (2016) Akira Andoh et al. JOURNAL OF CLINICAL BIOCHEMISTRY AND NUTRITION
- Culture of previously uncultured members of the human gut microbiota by culturomics
- (2016) Jean-Christophe Lagier et al. Nature Microbiology
- Matrix-assisted laser desorption ionization time-of-flight mass spectrometry for the rapid identification of yeasts causing bloodstream infections
- (2015) A.K. Ghosh et al. CLINICAL MICROBIOLOGY AND INFECTION
- The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota
- (2015) Jean-Christophe Lagier et al. CLINICAL MICROBIOLOGY REVIEWS
- The gut microbiota and inflammatory noncommunicable diseases: Associations and potentials for gut microbiota therapies
- (2015) Christina E. West et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Digestive tract mycobiota: A source of infection
- (2015) N. Gouba et al. MEDECINE ET MALADIES INFECTIEUSES
- The fungal microbiota of de-novo paediatric inflammatory bowel disease
- (2015) I. Mukhopadhya et al. MICROBES AND INFECTION
- Usefulness of MALDI-TOF Mass Spectrometry for Routine Identification of Candida Species in a Resource-Poor Setting
- (2015) Doudou Sow et al. MYCOPATHOLOGIA
- Repertory of eukaryotes (eukaryome) in the human gastrointestinal tract: taxonomy and detection methods
- (2015) I. Hamad et al. PARASITE IMMUNOLOGY
- Dysbiosis of Fungal Microbiota in the Intestinal Mucosa of Patients with Colorectal Adenomas
- (2015) Chunguang Luan et al. Scientific Reports
- Obesity changes the human gut mycobiome
- (2015) M. Mar Rodríguez et al. Scientific Reports
- Characterization of Bacterial and Fungal Microbiome in Children with Hirschsprung Disease with and without a History of Enterocolitis: A Multicenter Study
- (2015) Philip K. Frykman et al. PLoS One
- Review article: fungal microbiota and digestive diseases
- (2014) Z. K. Wang et al. ALIMENTARY PHARMACOLOGY & THERAPEUTICS
- The gastrointestinal microbiome – Functional interference between stomach and intestine
- (2014) Loris R. Lopetuso et al. BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY
- Comparative evaluation of two matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) systems for the identification of clinically significant yeasts
- (2014) W.Y. Jamal et al. INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
- Identification of filamentous fungi isolates by MALDI-TOF mass spectrometry: clinical evaluation of an extended reference spectra library
- (2014) Pierre T. Becker et al. MEDICAL MYCOLOGY
- Epidemiology of Invasive Fungal Infections in Patients with Acquired Immunodeficiency Syndrome at a Reference Hospital for Infectious Diseases in Brazil
- (2014) Renata Buccheri de Oliveira et al. MYCOPATHOLOGIA
- Mycobiota in gastrointestinal diseases
- (2014) Pranab K. Mukherjee et al. Nature Reviews Gastroenterology & Hepatology
- Amplicon –Based Metagenomic Analysis of Mixed Fungal Samples Using Proton Release Amplicon Sequencing
- (2014) Daniel P. Tonge et al. PLoS One
- Eukaryote Culturomics of the Gut Reveals New Species
- (2014) Nina Gouba et al. PLoS One
- Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools
- (2014) Fadi Bittar et al. Scientific Reports
- An Illumina metabarcoding pipeline for fungi
- (2014) Miklós Bálint et al. Ecology and Evolution
- MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond
- (2013) Brunella Posteraro et al. Expert Review of Proteomics
- Dysbiosis of Gut Fungal Microbiota is Associated With Mucosal Inflammation in Crohn’s Disease
- (2013) Qiurong Li et al. JOURNAL OF CLINICAL GASTROENTEROLOGY
- MALDI-TOF mass spectrometry identification of filamentous fungi in the clinical laboratory
- (2013) Stéphane Ranque et al. MYCOSES
- Plant and Fungal Diversity in Gut Microbiota as Revealed by Molecular and Culture Investigations
- (2013) Nina Gouba et al. PLoS One
- Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
- (2013) Christian Hoffmann et al. PLoS One
- Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
- (2013) Johan Bengtsson-Palme et al. Methods in Ecology and Evolution
- PANDAseq: paired-end assembler for illumina sequences
- (2012) Andre P Masella et al. BMC BIOINFORMATICS
- Microbial culturomics: paradigm shift in the human gut microbiome study
- (2012) J.-C. Lagier et al. CLINICAL MICROBIOLOGY AND INFECTION
- Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing
- (2012) Cécile Monard et al. FEMS MICROBIOLOGY ECOLOGY
- Development of a Clinically Comprehensive Database and a Simple Procedure for Identification of Molds from Solid Media by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry
- (2012) Anna F. Lau et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds
- (2012) Alberto Orgiazzi et al. PLoS One
- Molecular Detection of Eukaryotes in a Single Human Stool Sample from Senegal
- (2012) Ibrahim Hamad et al. PLoS One
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
- Beyond Bacteria: A Study of the Enteric Microbial Consortium in Extremely Low Birth Weight Infants
- (2011) Mariam Susan LaTuga et al. PLoS One
- Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions
- (2011) Laura Wegener Parfrey et al. Frontiers in Microbiology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
- Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
- (2010) O. Bader et al. CLINICAL MICROBIOLOGY AND INFECTION
- Correlation between gastrointestinal fungi and varying degrees of chronic hepatitis B virus infection
- (2010) Yu Chen et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Les levures du genre Malassezia : pathologie, milieux d’isolement et d’identification
- (2010) I. Ben Salah et al. JOURNAL DE MYCOLOGIE MEDICALE
- Obesity, Metabolic Syndrome, and Microbiota
- (2010) Herbert Tilg JOURNAL OF CLINICAL GASTROENTEROLOGY
- The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
- (2009) Rolf Henrik Nilsson et al. FEMS MICROBIOLOGY LETTERS
- Fungi and inflammatory bowel diseases: Alterations of composition and diversity
- (2008) Stephan J. Ott et al. SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More