Structure-based cross-docking analysis of antibody–antigen interactions
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Title
Structure-based cross-docking analysis of antibody–antigen interactions
Authors
Keywords
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Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-08-09
DOI
10.1038/s41598-017-08414-y
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- (2015) Matthew J. O’Meara et al. Journal of Chemical Theory and Computation
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- (2014) I. H. Moal et al. BIOINFORMATICS
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- (2009) A. Sircar et al. NUCLEIC ACIDS RESEARCH
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