Cadmium effects on DNA and protein metabolism in oyster (Crassostrea gigas) revealed by proteomic analyses

iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae)

(2017) Juan Chen et al.   JOURNAL OF PROTEOME RESEARCH

Transcription factor CgMTF-1 regulates CgZnT1 and CgMT expression in Pacific oyster (Crassostrea gigas) under zinc stress

(2015) Jie Meng et al.   AQUATIC TOXICOLOGY

Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure

(2015) Lei Wei et al.   Journal of Proteomics

iTRAQ-based quantitative proteomics analysis of Brassica napus leaves reveals pathways associated with chlorophyll deficiency

(2015) Pu Chu et al.   Journal of Proteomics

Metal accumulation and differentially expressed proteins in gill of oyster (Crassostrea hongkongensis) exposed to long-term heavy metal-contaminated estuary

(2014) Lianzhong Luo et al.   FISH & SHELLFISH IMMUNOLOGY

iTRAQ Protein Profile Differential Analysis between Somatic Globular and Cotyledonary Embryos Reveals Stress, Hormone, and Respiration Involved in Increasing Plantlet Regeneration of Gossypium hirsutum L.

(2014) Xiaoyang Ge et al.   JOURNAL OF PROTEOME RESEARCH

Differential effects of metal contamination on the transcript expression of immune- and stress-response genes in the Sydney Rock oyster, Saccostrea glomerata

(2013) Daisy A. Taylor et al.   ENVIRONMENTAL POLLUTION

Evolutionary Patterns in Trace Metal (Cd and Zn) Efflux Capacity in Aquatic Organisms

(2013) Monica D. Poteat et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

iTRAQ analysis of gill proteins from the zebrafish (Danio rerio) infected with Aeromonas hydrophila

(2013) Aijun Lü et al.   FISH & SHELLFISH IMMUNOLOGY

Quantitative iTRAQ LC–MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris

(2013) Xiao-qiong Lin et al.   Journal of Proteomics

Differential ABCB and ABCC gene expression and efflux activities in gills and hemocytes of Mytilus galloprovincialis and their involvement in cadmium response

(2013) Camilla Della Torre et al.   MARINE ENVIRONMENTAL RESEARCH

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

(2013) Mingzhou Li et al.   NATURE GENETICS

DNA Damage and Transcriptional Changes in the Gills of Mytilus galloprovincialis Exposed to Nanomolar Doses of Combined Metal Salts (Cd, Cu, Hg)

(2013) Laura Varotto et al.   PLoS One

Proteomic analysis of Sydney Rock oysters (Saccostrea glomerata) exposed to metal contamination in the field

(2012) Emma L. Thompson et al.   ENVIRONMENTAL POLLUTION

Cadmium-induced changes in trace element bioaccumulation and proteomics perspective in four marine bivalves

(2012) Fengjie Liu et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Quantitative iTRAQ LC–MS/MS Proteomics Reveals Metabolic Responses to Biofuel Ethanol in Cyanobacterial Synechocystis sp. PCC 6803

(2012) Jianjun Qiao et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic research in bivalves

(2012) Alexandre Campos et al.   Journal of Proteomics

Identification and functional characterization of MRE-binding transcription factor (MTF) in Crassostrea gigas and its conserved role in metal-induced response

(2012) Jinrong Qiu et al.   MOLECULAR BIOLOGY REPORTS

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

A proteomic analysis of the effects of metal contamination on Sydney Rock Oyster (Saccostrea glomerata) haemolymph

(2011) Emma L. Thompson et al.   AQUATIC TOXICOLOGY

Proteomic discovery of biomarkers of metal contamination in Sydney Rock oysters (Saccostrea glomerata)

(2011) Emma L. Thompson et al.   AQUATIC TOXICOLOGY

Characterisation and genetic polymorphism of metallothionein geneCgMT4in experimental families of Pacific oysterCrassostrea gigasdisplaying summer mortality

(2011) Elise David et al.   BIOMARKERS

Ubiquitin–proteasome pathway and cellular responses to oxidative stress

(2011) Fu Shang et al.   FREE RADICAL BIOLOGY AND MEDICINE

Crystal structure of a copper-transporting PIB-type ATPase

(2011) Pontus Gourdon et al.   NATURE

Trace metal contamination in estuarine and coastal environments in China

(2011) Ke Pan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Cadmium stress: an oxidative challenge

(2010) Ann Cuypers et al.   BIOMETALS

Early defense responses in the freshwater bivalve Corbicula fluminea exposed to copper and cadmium: Transcriptional and histochemical studies

(2010) Aurélie Bigot et al.   ENVIRONMENTAL TOXICOLOGY

Addressing Accuracy and Precision Issues in iTRAQ Quantitation

(2010) Natasha A. Karp et al.   MOLECULAR & CELLULAR PROTEOMICS

Direct inhibition of excision/synthesis DNA repair activities by cadmium: Analysis on dedicated biochips

(2010) S. Candéias et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptomic response of Argopecten purpuratus post-larvae to copper exposure under experimental conditions

(2009) Manuel Zapata et al.   GENE

Metallothionein protection of cadmium toxicity

(2009) Curtis D. Klaassen et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Effects of elevated temperature and cadmium exposure on stress protein response in eastern oysters Crassostrea virginica (Gmelin)

(2008) A.V. Ivanina et al.   AQUATIC TOXICOLOGY

cDNA cloning and expression analysis of Eisenia fetida (Annelida: Oligochaeta) phytochelatin synthase under cadmium exposure

(2008) Franck Brulle et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of cadmium on cellular protein and glutathione synthesis and expression of stress proteins in eastern oysters, Crassostrea virginica Gmelin

(2008) A. V. Ivanina et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH