Invasion of Ancestral Mammals into Dim-light Environments Inferred from Adaptive Evolution of the Phototransduction Genes

Evolution and expression of the phosphodiesterase 6 genes unveils vertebrate novelty to control photosensitivity

(2016) David Lagman et al.   BMC EVOLUTIONARY BIOLOGY

Retinal transcriptome sequencing sheds light on the adaptation to nocturnal and diurnal lifestyles in raptors

(2016) Yonghua Wu et al.   Scientific Reports

A phylogenomic analysis of turtles

(2015) Nicholas G. Crawford et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

(2013) R Pyron et al.   BMC EVOLUTIONARY BIOLOGY

The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC

(2013) Walid H. Gharib et al.   MOLECULAR BIOLOGY AND EVOLUTION

The nocturnal bottleneck and the evolution of activity patterns in mammals

(2013) M. P. Gerkema et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of phototransduction, vertebrate photoreceptors and retina

(2013) Trevor D. Lamb   PROGRESS IN RETINAL AND EYE RESEARCH

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution

(2013) Graham J. Slater et al.   Methods in Ecology and Evolution

Phylogenetic evidence for a shift in the mode of mammalian body size evolution at the Cretaceous-Palaeogene boundary

(2013) Graham J. Slater   Methods in Ecology and Evolution

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

(2012) N. G. Crawford et al.   Biology Letters

INTEGRATING FOSSILS WITH MOLECULAR PHYLOGENIES IMPROVES INFERENCE OF TRAIT EVOLUTION

(2012) Graham J. Slater et al.   EVOLUTION

Nocturnal light environments and species ecology: implications for nocturnal color vision in forests

(2012) C. C. Veilleux et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Relationship between Slow Photoresponse Recovery Rate and Temporal Resolution of Vision

(2012) Y. Umino et al.   JOURNAL OF NEUROSCIENCE

Molecular ecology and adaptation of visual photopigments in craniates

(2012) WAYNE I. L. DAVIES et al.   MOLECULAR ECOLOGY

Eye shape and the nocturnal bottleneck of mammals

(2012) M. I. Hall et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

An Improved Likelihood Ratio Test for Detecting Site-Specific Functional Divergence among Clades of Protein-Coding Genes

(2011) Cameron J. Weadick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

(2010) Ari Löytynoja et al.   BMC BIOINFORMATICS

The Nocturnal Bottleneck and the Evolution of Mammalian Vision

(2010) Christopher P. Heesy et al.   BRAIN BEHAVIOR AND EVOLUTION

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

(2010) W. Fletcher et al.   MOLECULAR BIOLOGY AND EVOLUTION