Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism

Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew

(2016) Chloé E. L. Delmas et al.   Evolutionary Applications

Pathogenicity Variation and Population Genetic Structure ofPlasmopara viticolain China

(2016) Xinlong Li et al.   JOURNAL OF PHYTOPATHOLOGY

Studying the Mechanism of Plasmopara viticola RxLR Effectors on Suppressing Plant Immunity

(2016) Jiang Xiang et al.   Frontiers in Microbiology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

(2015) Rahul Sharma et al.   BMC GENOMICS

Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis

(2015) Alyssa Burkhardt et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Recent Progress in RXLR Effector Research

(2015) Ryan G. Anderson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives

(2015) Michael F. Seidl et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen Peronospora tabacina

(2015) Lida Derevnina et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Characterization of the secretome of Plasmopara viticola by de novo transcriptome analysis

(2015) Ling Yin et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Comparative analysis of expressed CRN and RXLR effectors from twoPlasmoparaspecies causing grapevine and sunflower downy mildew

(2015) P. Mestre et al.   PLANT PATHOLOGY

Comparative transcriptome analysis reveals defense-related genes and pathways against downy mildew in Vitis amurensis grapevine

(2015) Xinlong Li et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Virulence Essential CRN Effector of Phytophthora capsici Suppresses Host Defense and Induces Cell Death in Plant Nucleus

(2015) Joseph Juma Mafurah et al.   PLoS One

Insect effectors and gene-for-gene interactions with host plants

(2015) Jeff Stuart   Current Opinion in Insect Science

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

(2014) Sagar M. Utturkar et al.   BIOINFORMATICS

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

(2014) Steven D Brown et al.   Biotechnology for Biofuels

Genetic diversity and population structure of Plasmopara viticola in China

(2014) Ling Yin et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Carbohydrate-related enzymes of important Phytophthora plant pathogens

(2014) Henk Brouwer et al.   FUNGAL GENETICS AND BIOLOGY

Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens

(2014) Vivianne G. A. A. Vleeshouwers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Geographic Distribution of Cryptic Species of Plasmopara viticola Causing Downy Mildew on Wild and Cultivated Grape in Eastern North America

(2014) Mélanie Rouxel et al.   PHYTOPATHOLOGY

Phytophthora sojae Effector PsCRN70 Suppresses Plant Defenses in Nicotiana benthamiana

(2014) Nasir Ahmed Rajput et al.   PLoS One

Functionally Redundant RXLR Effectors from Phytophthora infestans Act at Different Steps to Suppress Early flg22-Triggered Immunity

(2014) Xiangzi Zheng et al.   PLoS Pathogens

Genome-wide sequencing ofPhytophthora lateralisreveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland

(2013) Lisa Quinn et al.   FEMS MICROBIOLOGY LETTERS

Rapid and multiregional adaptation to host partial resistance in a plant pathogenic oomycete: Evidence from European populations of Plasmopara viticola, the causal agent of grapevine downy mildew

(2013) François Delmotte et al.   INFECTION GENETICS AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogenPlasmopara viticola

(2013) Michael C. Fontaine et al.   MOLECULAR ECOLOGY

Genetic dissection of a TIR-NB-LRR locus from the wild North American grapevine speciesMuscadinia rotundifoliaidentifies paralogous genes conferring resistance to major fungal and oomycete pathogens in cultivated grapevine

(2013) Angela Feechan et al.   PLANT JOURNAL

Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity

(2013) Remco Stam et al.   PLoS One

Historical Introgression of the Downy Mildew Resistance Gene Rpv12 from the Asian Species Vitis amurensis into Grapevine Varieties

(2013) Silvia Venuti et al.   PLoS One

Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes

(2013) Seung Chul Shin et al.   PLoS One

Mechanisms and Evolution of Virulence in Oomycetes

(2012) Rays H.Y. Jiang et al.   Annual Review of Phytopathology

Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing

(2012) JOOST H. M. STASSEN et al.   MOLECULAR PLANT PATHOLOGY

Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

(2012) Kurt H. Lamour et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Phylogenetic and experimental evidence for host-specialized cryptic species in a biotrophic oomycete

(2012) Mélanie Rouxel et al.   NEW PHYTOLOGIST

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

The Irish Potato Famine Pathogen Phytophthora infestans Translocates the CRN8 Kinase into Host Plant Cells

(2012) Mireille van Damme et al.   PLoS Pathogens

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes

(2011) Matthew G Links et al.   BMC GENOMICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptional Programming and Functional Interactions within thePhytophthora sojaeRXLR Effector Repertoire

(2011) Qunqing Wang et al.   PLANT CELL

Rpv10: a new locus from the Asian Vitis gene pool for pyramiding downy mildew resistance loci in grapevine

(2011) Florian Schwander et al.   THEORETICAL AND APPLIED GENETICS

Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance

(2011) Gabriele Di Gaspero et al.   THEORETICAL AND APPLIED GENETICS

Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana

(2011) Eric Kemen et al.   PLOS BIOLOGY

Oomycete–plant coevolution: recent advances and future prospects

(2010) Marco Thines et al.   CURRENT OPINION IN PLANT BIOLOGY

Two Host Cytoplasmic Effectors Are Required for Pathogenesis of Phytophthora sojae by Suppression of Host Defenses

(2010) T. Liu et al.   PLANT PHYSIOLOGY

Ancient class of translocated oomycete effectors targets the host nucleus

(2010) S. Schornack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Copy Number Variation and Transcriptional Polymorphisms of Phytophthora sojae RXLR Effector Genes Avr1a and Avr3a

(2009) Dinah Qutob et al.   PLoS One

The Phytophthora sojae Avirulence Locus Avr3c Encodes a Multi-Copy RXLR Effector with Sequence Polymorphisms among Pathogen Strains

(2009) Suomeng Dong et al.   PLoS One

Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach

(2009) David Burstein et al.   PLoS Pathogens

cDNA-AFLP analysis of plant and pathogen genes expressed in grapevine infected with Plasmopara viticola

(2008) Marianna Polesani et al.   BMC GENOMICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY