RNA-Seq-based transcriptomic and metabolomic analysis reveal stress responses and programmed cell death induced by acetic acid in Saccharomyces cerevisiae

Transcriptome analysis of acetic-acid-treated yeast cells identifies a large set of genes whose overexpression or deletion enhances acetic acid tolerance

(2015) Yeji Lee et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Acetyl-CoA and the regulation of metabolism: mechanisms and consequences

(2015) Lei Shi et al.   CURRENT OPINION IN CELL BIOLOGY

Proteome and metabolome profiling of wild-type and YCA1 -knock-out yeast cells during acetic acid-induced programmed cell death

(2015) Valentina Longo et al.   Journal of Proteomics

Transcriptome analysis reveals the oxidative stress response in Saccharomyces cerevisiae

(2015) Hongwei Zhao et al.   RSC Advances

Bulk RNA degradation by nitrogen starvation-induced autophagy in yeast

(2014) H. Huang et al.   EMBO JOURNAL

The growing landscape of lysine acetylation links metabolism and cell signalling

(2014) Chunaram Choudhary et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Genomic and transcriptome analyses reveal that MAPK- and phosphatidylinositol-signaling pathways mediate tolerance to 5-hydroxymethyl-2-furaldehyde for industrial yeast Saccharomyces cerevisiae

(2014) Qian Zhou et al.   Scientific Reports

Transcriptional profiling of Saccharomyces cerevisiae T2 cells upon exposure to hardwood spent sulphite liquor: comparison to acetic acid, furfural and hydroxymethylfurfural

(2013) Paramjit K. Bajwa et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Acetic acid inhibits nutrient uptake in Saccharomyces cerevisiae: auxotrophy confounds the use of yeast deletion libraries for strain improvement

(2013) Jun Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide identification of genes involved in the positive and negative regulation of acetic acid-induced programmed cell death in Saccharomyces cerevisiae

(2013) Marlene Sousa et al.   BMC GENOMICS

Involvement of Yeast HSP90 Isoforms in Response to Stress and Cell Death Induced by Acetic Acid

(2013) Alexandra Silva et al.   PLoS One

Molecular mechanisms of Saccharomyces cerevisiae stress adaptation and programmed cell death in response to acetic acid

(2013) Sergio Giannattasio et al.   Frontiers in Microbiology

Quantitative Analysis of the Modes of Growth Inhibition by Weak Organic Acids in Saccharomyces cerevisiae

(2012) Azmat Ullah et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Acetyl-CoA Carboxylase Regulates Global Histone Acetylation

(2012) Luciano Galdieri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

(2012) Swaminathan Venkatesh et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Function and Molecular Mechanism of Acetylation in Autophagy Regulation

(2012) C. Yi et al.   SCIENCE

How an Organism Dies Affects the Fitness of Its Neighbors

(2011) Pierre M. Durand et al.   AMERICAN NATURALIST

Intracellular pH is a tightly controlled signal in yeast

(2011) Rick Orij et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Regulation of Saccharomyces cerevisiae Plasma membrane H+-ATPase (Pma1) by Dextrose and Hsp30 during Exposure to Thermal Stress

(2011) Ramesh C. Meena et al.   INDIAN JOURNAL OF MICROBIOLOGY

Metabolite extraction from suspension-cultured mammalian cells for global metabolite profiling

(2011) Christopher A Sellick et al.   Nature Protocols

Acetic acid-induced programmed cell death and release of volatile organic compounds in Chlamydomonas reinhardtii

(2011) Zhaojiang Zuo et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The propeptide of yeast cathepsin D inhibits programmed necrosis

(2011) D Carmona-Gutiérrez et al.   Cell Death & Disease

Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae

(2010) Bing-Zhi Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The impact of acetate metabolism on yeast fermentative performance and wine quality: reduction of volatile acidity of grape musts and wines

(2010) Alice Vilela-Moura et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mitochondrial degradation in acetic acid-induced yeast apoptosis: the role of Pep4 and the ADP/ATP carrier

(2010) Clara Pereira et al.   MOLECULAR MICROBIOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Genomic Expression Program Involving the Haa1p-Regulon in Saccharomyces cerevisiae Response to Acetic Acid

(2010) Nuno P. Mira et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux

(2010) Q. Wang et al.   SCIENCE

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives

(2009) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Apoptosis and the yeast actin cytoskeleton

(2009) J E Leadsham et al.   CELL DEATH AND DIFFERENTIATION

Presence of the Fps1p aquaglyceroporin channel is essential for Hog1p activation, but suppresses Slt2(Mpk1)p activation, with acetic acid stress of yeast

(2009) M. Mollapour et al.   MICROBIOLOGY-SGM

In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth

(2009) R. Orij et al.   MICROBIOLOGY-SGM

Yeast protein expression profile during acetic acid-induced apoptosis indicates causal involvement of the TOR pathway

(2009) Bruno Almeida et al.   PROTEOMICS

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation

(2008) Y.-y. Lin et al.   GENES & DEVELOPMENT

Net energy of cellulosic ethanol from switchgrass

(2008) M. R. Schmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA