Transcriptome analysis reveals the oxidative stress response in Saccharomyces cerevisiae

Improvement of oxidative stress tolerance in Saccharomyces cerevisiae through global transcription machinery engineering

(2014) Hongwei Zhao et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Experimental mapping of DNA duplex shape enabled by global lineshape analyses of a nucleotide-independent nitroxide probe

(2014) Yuan Ding et al.   NUCLEIC ACIDS RESEARCH

Achieving the Balance between ROS and Antioxidants: When to Use the Synthetic Antioxidants

(2013) Borut Poljsak et al.   Oxidative Medicine and Cellular Longevity

Yeast adaptation to weak acids prevents futile energy expenditure

(2013) Azmat Ullah et al.   Frontiers in Microbiology

Aldehyde dehydrogenases in cellular responses to oxidative/electrophilicstress

(2012) Surendra Singh et al.   FREE RADICAL BIOLOGY AND MEDICINE

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

(2012) Intawat Nookaew et al.   NUCLEIC ACIDS RESEARCH

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Age Related Changes in NAD+ Metabolism Oxidative Stress and Sirt1 Activity in Wistar Rats

(2011) Nady Braidy et al.   PLoS One

Systems Analysis of Protein Modification and Cellular Responses Induced by Electrophile Stress

(2010) Aaron T. Jacobs et al.   ACCOUNTS OF CHEMICAL RESEARCH

Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae

(2010) Menggen Ma et al.   BMC GENOMICS

Gene expression microarray analysis of heat stress in the soil invertebrate Folsomia candida

(2010) B. Nota et al.   INSECT MOLECULAR BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Incorporating sequence quality data into alignment improves DNA read mapping

(2010) Martin C. Frith et al.   NUCLEIC ACIDS RESEARCH

The Yap family and its role in stress response

(2010) Claudina Rodrigues-Pousada et al.   YEAST

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Insight into the Carboxyl Transferase Domain Mechanism of Pyruvate Carboxylase fromRhizobium etli

(2009) Tonya N. Zeczycki et al.   BIOCHEMISTRY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Characterization of the DNA-binding motif of the arsenic-responsive transcription factor Yap8p

(2008) Yulia Ilina et al.   BIOCHEMICAL JOURNAL

Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress inSaccharomyces cerevisiae

(2008) Katsunori Yoshikawa et al.   FEMS YEAST RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Multiple Pathways Differentially Regulate Global Oxidative Stress Responses in Fission Yeast

(2007) Dongrong Chen et al.   MOLECULAR BIOLOGY OF THE CELL