Interferon Regulatory Factor 1 Marks Activated Genes and Can Induce Target Gene Expression in Systemic Lupus Erythematosus

Polarization of Primary Human Monocytes by IFN-  Induces Chromatin Changes and Recruits RNA Pol II to the TNF-  Promoter

(2014) S. Garrett et al.   JOURNAL OF IMMUNOLOGY

The SLE Transcriptome Exhibits Evidence of Chronic Endotoxin Exposure and Has Widespread Dysregulation of Non-Coding and Coding RNAs

(2014) Lihua Shi et al.   PLoS One

Definition of IFN-γ-related pathways critical for chemically-induced systemic autoimmunity

(2012) K. Michael Pollard et al.   JOURNAL OF AUTOIMMUNITY

Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response

(2012) Terry C. Fang et al.   JOURNAL OF EXPERIMENTAL MEDICINE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-wide analysis of interferon regulatory factor I binding in primary human monocytes

(2011) Lihua Shi et al.   GENE

Monocyte polarization: the relationship of genome-wide changes in H4 acetylation with polarization

(2011) Z Zhang et al.   GENES AND IMMUNITY

Chromatin Dynamics of Gene Activation and Repression in Response to Interferon α (IFNα) Reveal New Roles for Phosphorylated and Unphosphorylated Forms of the Transcription Factor STAT2

(2011) Barbara Testoni et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dendritic Cells in Lupus Are Not Required for Activation of T and B Cells but Promote Their Expansion, Resulting in Tissue Damage

(2010) Lino L. Teichmann et al.   IMMUNITY

IFN-  abrogates endotoxin tolerance by facilitating Toll-like receptor-induced chromatin remodeling

(2010) J. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes

(2009) Z Zhang et al.   GENES AND IMMUNITY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

LPS and Poly I:C Induce Chromatin Modifications at a Novel Upstream Region of the IL-23 p19 Promoter

(2008) Stacey Garrett et al.   INFLAMMATION

Sex hormones and systemic lupus erythematosus

(2008) M Petri   LUPUS

TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon–response genes

(2008) Anna Yarilina et al.   NATURE IMMUNOLOGY