GPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences

iPTM-mLys: identifying multiple lysine PTM sites and their different types

(2016) Wang-Ren Qiu et al.   BIOINFORMATICS

Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set

(2016) Qiqige Wuyun et al.   PLoS One

Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow

(2015) Tanya Svinkina et al.   MOLECULAR & CELLULAR PROTEOMICS

Prediction of protein kinase-specific phosphorylation sites in hierarchical structure using functional information and random forest

(2014) Wenwen Fan et al.   AMINO ACIDS

Improving the performance of protein kinase identification via high dimensional protein–protein interactions and substrate structure data

(2014) Xiaoyi Xu et al.   Molecular BioSystems

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs

(2014) Qi Zhao et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

Proteome-wide Analysis of Amino Acid Variations That Influence Protein Lysine Acetylation

(2013) Sheng-Bao Suo et al.   JOURNAL OF PROTEOME RESEARCH

pLogo: a probabilistic approach to visualizing sequence motifs

(2013) Joseph P O'Shea et al.   NATURE METHODS

CPLM: a database of protein lysine modifications

(2013) Zexian Liu et al.   NUCLEIC ACIDS RESEARCH

A method to distinguish between lysine acetylation and lysine methylation from protein sequences

(2012) Shao-Ping Shi et al.   JOURNAL OF THEORETICAL BIOLOGY

Absolute Quantitation of Isoforms of Post-translationally Modified Proteins in Transgenic Organism

(2012) Yaojun Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation

(2012) Jianlin Shao et al.   Molecular BioSystems

PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features

(2012) Shao-Ping Shi et al.   Molecular BioSystems

ASEB: a web server for KAT-specific acetylation site prediction

(2012) L. Wang et al.   NUCLEIC ACIDS RESEARCH

GPS-ARM: Computational Analysis of the APC/C Recognition Motif by Predicting D-Boxes and KEN-Boxes

(2012) Zexian Liu et al.   PLoS One

Position-Specific Analysis and Prediction for Protein Lysine Acetylation Based on Multiple Features

(2012) Sheng-Bao Suo et al.   PLoS One

Function and Molecular Mechanism of Acetylation in Autophagy Regulation

(2012) C. Yi et al.   SCIENCE

The Leukemogenicity of AML1-ETO Is Dependent on Site-Specific Lysine Acetylation

(2011) L. Wang et al.   SCIENCE

Predicting post-translational lysine acetylation using support vector machines

(2010) F. Gnad et al.   BIOINFORMATICS

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites

(2010) Tzong-Yi Lee et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Lysine acetylation sites prediction using an ensemble of support vector machine classifiers

(2010) Yan Xu et al.   JOURNAL OF THEORETICAL BIOLOGY

Regulation of Cellular Metabolism by Protein Lysine Acetylation

(2010) S. Zhao et al.   SCIENCE

Introducing the acetylome

(2009) Karen T Smith et al.   NATURE BIOTECHNOLOGY

Proteome-wide prediction of acetylation substrates

(2009) A. Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Prediction of Lysine Acetylation by Support Vector Machines

(2009) Songling Li et al.   PROTEIN AND PEPTIDE LETTERS

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

(2009) C. Choudhary et al.   SCIENCE

A generic method for assignment of reliability scores applied to solvent accessibility predictions

(2009) Bent Petersen et al.   BMC STRUCTURAL BIOLOGY