In-depth comparison of somatic point mutation callers based on different tumor next-generation sequencing depth data
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
In-depth comparison of somatic point mutation callers based on different tumor next-generation sequencing depth data
Authors
Keywords
-
Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-11-22
DOI
10.1038/srep36540
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- repRNA: a web server for generating various feature vectors of RNA sequences
- (2015) Bin Liu et al. MOLECULAR GENETICS AND GENOMICS
- Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences
- (2015) Bin Liu et al. NUCLEIC ACIDS RESEARCH
- Meta-Analysis-Based Preliminary Exploration of the Connection between ATDILI and Schizophrenia by GSTM1/T1 Gene Polymorphisms
- (2015) Lei Cai et al. PLoS One
- PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition
- (2014) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data
- (2014) Weixin Wang et al. BIOINFORMATICS
- SM a SH: a benchmarking toolkit for human genome variant calling
- (2014) Ameet Talwalkar et al. BIOINFORMATICS
- Toward better understanding of artifacts in variant calling from high-coverage samples
- (2014) Heng Li BIOINFORMATICS
- repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
- (2014) Bin Liu et al. BIOINFORMATICS
- PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions
- (2014) Wei Chen et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Combining calls from multiple somatic mutation-callers
- (2014) Su Kim et al. BMC BIOINFORMATICS
- BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity
- (2014) Brandi L Cantarel et al. BMC BIOINFORMATICS
- Comparison of somatic mutation calling methods in amplicon and whole exome sequence data
- (2014) Huilei Xu et al. BMC GENOMICS
- Global optimization of somatic variant identification in cancer genomes with a global community challenge
- (2014) Paul C Boutros et al. NATURE GENETICS
- Whole-exome and targeted gene sequencing of gallbladder carcinoma identifies recurrent mutations in the ErbB pathway
- (2014) Maolan Li et al. NATURE GENETICS
- Expanding the computational toolbox for mining cancer genomes
- (2014) Li Ding et al. NATURE REVIEWS GENETICS
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer
- (2014) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- A comparative analysis of algorithms for somatic SNV detection in cancer
- (2013) Nicola D. Roberts et al. BIOINFORMATICS
- Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes
- (2013) Mamunur Rashid et al. BIOINFORMATICS
- Comparing somatic mutation-callers: beyond Venn diagrams
- (2013) Su Kim et al. BMC BIOINFORMATICS
- Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
- (2013) Kristian Cibulskis et al. NATURE BIOTECHNOLOGY
- An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data
- (2013) Yuichi Shiraishi et al. NUCLEIC ACIDS RESEARCH
- Somatic Point Mutation Calling in Low Cellularity Tumors
- (2013) Karin S. Kassahn et al. PLoS One
- A simple consensus approach improves somatic mutation prediction accuracy
- (2013) David L Goode et al. Genome Medicine
- Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers
- (2013) Qingguo Wang et al. Genome Medicine
- JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
- (2012) Andrew Roth et al. BIOINFORMATICS
- Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
- (2012) Christopher T. Saunders et al. BIOINFORMATICS
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- NGS catalog: A database of next generation sequencing studies in humans
- (2012) Junfeng Xia et al. HUMAN MUTATION
- Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
- (2012) Andrew V. Biankin et al. NATURE
- Comprehensive molecular portraits of human breast tumours
- (2012) Daniel C. Koboldt et al. NATURE
- Prostate Cancer with Variants in CYP17 and UGT2B17 Genes: A Meta-Analysis
- (2012) Lai Cai et al. PROTEIN AND PEPTIDE LETTERS
- SomaticSniper: identification of somatic point mutations in whole genome sequencing data
- (2011) David E. Larson et al. BIOINFORMATICS
- De novo discovery of mutated driver pathways in cancer
- (2011) F. Vandin et al. GENOME RESEARCH
- Identifying cancer driver genes in tumor genome sequencing studies
- (2010) Ahrim Youn et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Comparison of Sanger Sequencing, Pyrosequencing, and Melting Curve Analysis for the Detection of KRAS Mutations
- (2010) Athanasios C. Tsiatis et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Computational solutions to large-scale data management and analysis
- (2010) Eric E. Schadt et al. NATURE REVIEWS GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Identification of deleterious mutations within three human genomes
- (2009) S. Chun et al. GENOME RESEARCH
- The cancer genome
- (2009) Michael R. Stratton et al. NATURE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started