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JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

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Tumour heterogeneity and drug resistance: Personalising cancer medicine through functional genomics

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SomaticSniper: identification of somatic point mutations in whole genome sequencing data

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Identification and correction of systematic error in high-throughput sequence data

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Direct mutation analysis by high-throughput sequencing: From germline to low-abundant, somatic variants

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Analysis of next-generation genomic data in cancer: accomplishments and challenges

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Advances in understanding cancer genomes through second-generation sequencing

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Mutational Heterogeneity in Human Cancers: Origin and Consequences

(2009) Jesse J. Salk et al.   Annual Review of Pathology-Mechanisms of Disease

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

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The Difference in p53 Mutations between Cancers of the Upper and Lower Gastrointestinal Tract

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A comprehensive catalogue of somatic mutations from a human cancer genome

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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