Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity

Origin and evolution of spliceosomal introns

(2012) Igor B Rogozin et al.   Biology Direct

PRP8 inteins in species of the genus Botrytis and other ascomycetes

(2012) Annika A.M. Bokor et al.   FUNGAL GENETICS AND BIOLOGY

Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling

(2012) Daniel Vaulot et al.   PLoS One

Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/ -catenin complex

(2012) S. A. Nichols et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus

(2011) Elif Demir-Hilton et al.   ISME Journal

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase

(2011) M. Dlakic et al.   RNA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements

(2010) Kristen S Swithers et al.   BMC EVOLUTIONARY BIOLOGY

Viral Mutation Rates

(2010) R. Sanjuan et al.   JOURNAL OF VIROLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

(2010) M. L. Cuvelier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer

(2009) K. Yahara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Phylogeny and Classification of the Mamiellophyceae class. nov. (Chlorophyta) based on Sequence Comparisons of the Nuclear- and Plastid-encoded rRNA Operons

(2009) Birger Marin et al.   PROTIST

Extensive, Recent Intron Gains in Daphnia Populations

(2009) W. Li et al.   SCIENCE

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae

(2008) Alexander I Culley et al.   ISME Journal

A Phylogenomic Investigation into the Origin of Metazoa

(2008) Iñaki Ruiz-Trillo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Convergence on Highly-Conserved 3′ Intron Structures in Intron-Poor Eukaryotes and Insights into the Ancestral Eukaryotic Genome

(2008) Manuel Irimia et al.   PLoS Genetics