4.7 Article

Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice

Journal

SCIENTIFIC REPORTS
Volume 6, Issue -, Pages -

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NATURE PUBLISHING GROUP
DOI: 10.1038/srep33969

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Funding

  1. Agriculture and Food Research Initiative Competitive Grant from the USDA National Institute of Food and Agriculture [2014-06624]
  2. National Institutes of Health
  3. National Institute of Environmental Health Sciences [ES004869, ES019964, ES022186]

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Environmental and genetic factors represent key components in the establishment/maintenance of the intestinal microbiota. The aryl hydrocarbon receptor (AHR) is emerging as a pleiotropic factor, modulating pathways beyond its established role as a xenobiotic sensor. The AHR is known to regulate immune surveillance within the intestine through retention of intraepithelial lymphocytes, functional redistribution of Th17/Treg balance. Consequently, environmental/genetic manipulation of AHR activity likely influences host-microbe homeostasis. Utilizing C57BL6/J Ahr(-/+) and Ahr(-/+) co-housed littermates followed by 18 days of genotypic segregation, we examined the influence of AHR expression upon intestinal microbe composition/functionality and host physiology. 16S sequencing/quantitative PCR (qPCR) revealed significant changes in phyla abundance, particularly Verrucomicrobia together with segmented filamentous bacteria, and an increase in species diversity in Ahr(-/-) mice following genotypic segregation. Metagenomics/metabolomics indicate microbial composition is associated with functional shifts in bacterial metabolism. Analysis identified Ahr(-/-) -dependent increases in ileal gene expression, indicating increased inflammatory tone. Transfer of Ahr(-/-) microbiota to wild-type germ-free mice recapitulated the increase Verrucomicrobia and inflammatory tone, indicating Ahr(-/-) microbial dependence. These data suggest a role for the AHR in influencing the community structure of the intestinal microbiota.

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