Whole-transcriptome analysis of UUO mouse model of renal fibrosis reveals new molecular players in kidney diseases

Targeted gene correction of RUNX1 in induced pluripotent stem cells derived from familial platelet disorder with propensity to myeloid malignancy restores normal megakaryopoiesis

(2015) Hiromitsu Iizuka et al.   EXPERIMENTAL HEMATOLOGY

Identification of Genes Associated with Smad3-dependent Renal Injury by RNA-seq-based Transcriptome Analysis

(2015) Qin Zhou et al.   Scientific Reports

An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1

(2015) Zhi-Min Zhang et al.   Cell Reports

Deletion of ErbB4 accelerates polycystic kidney disease progression in cpk mice

(2014) Fenghua Zeng et al.   KIDNEY INTERNATIONAL

Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns

(2014) Panagiotis Moulos et al.   NUCLEIC ACIDS RESEARCH

Posttranslational modifications of RUNX1 as potential anticancer targets

(2014) S Goyama et al.   ONCOGENE

Increasing role of UHRF1 in the reading and inheritance of the epigenetic code as well as in tumorogenesis

(2013) Christian Bronner et al.   BIOCHEMICAL PHARMACOLOGY

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Sox9 and programming of liver and pancreatic progenitors

(2013) Yoshiya Kawaguchi   JOURNAL OF CLINICAL INVESTIGATION

Revolution of nephrology research by deep sequencing: ChIP-seq and RNA-seq

(2013) Imari Mimura et al.   KIDNEY INTERNATIONAL

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Transgelin Up-Regulation in Obstructive Nephropathy

(2013) Fani Karagianni et al.   PLoS One

The Role of SOX9 Transcription Factor in Pancreatic and Duodenal Development

(2013) Jamie Belo et al.   STEM CELLS AND DEVELOPMENT

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes

(2012) Eric W. Brunskill et al.   DEVELOPMENTAL BIOLOGY

The KUPKB: a novel Web application to access multiomics data on kidney disease

(2012) Julie Klein et al.   FASEB JOURNAL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease

(2012) Irfan A. Qureshi et al.   NATURE REVIEWS NEUROSCIENCE

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

(2012) D. Tabas-Madrid et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Prox1 suppresses the proliferation of neuroblastoma cells via a dual action in p27-Kip1 and Cdc25A

(2012) I P Foskolou et al.   ONCOGENE

The RenTg Mice: A Powerful Tool to Study Renin-Dependent Chronic Kidney Disease

(2012) Anne-Cecile Huby et al.   PLoS One

The hallmarks of cancer

(2012) Tony Gutschner et al.   RNA Biology

Aberrations of EZH2 in Cancer

(2011) A. Chase et al.   CLINICAL CANCER RESEARCH

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Investigating mechanisms of chronic kidney disease in mouse models

(2011) Allison A. Eddy et al.   PEDIATRIC NEPHROLOGY

AP-1 — The Jun proteins: Oncogenes or tumor suppressors in disguise?

(2010) Eitan Shaulian   CELLULAR SIGNALLING

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Migfilin Interacts with Src and Contributes to Cell-Matrix Adhesion-mediated Survival Signaling

(2009) Jianping Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

WISP1, a Pro-mitogenic, Pro-survival Factor, Mediates Tumor Necrosis Factor-α (TNF-α)-stimulated Cardiac Fibroblast Proliferation but Inhibits TNF-α-induced Cardiomyocyte Death

(2009) Kaliyamurthi Venkatachalam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Invariant Natural Killer T Cells and TGF-  Attenuate Anti-GBM Glomerulonephritis

(2009) L. Mesnard et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Ureteral obstruction as a model of renal interstitial fibrosis and obstructive nephropathy

(2009) Robert L. Chevalier et al.   KIDNEY INTERNATIONAL

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information

(2009) R. Nogales-Cadenas et al.   NUCLEIC ACIDS RESEARCH

Restoration of Podocyte Structure and Improvement of Chronic Renal Disease in Transgenic Mice Overexpressing Renin

(2009) Anne-Cécile Huby et al.   PLoS One

Screening for Chronic Kidney Disease: Where Does Europe Go?

(2008) P. E. de Jong et al.   Clinical Journal of the American Society of Nephrology

Overexpression of EPHA2 receptor destabilizes adherens junctions via a RhoA-dependent mechanism

(2008) W. B. Fang et al.   JOURNAL OF CELL SCIENCE

TGF-β1 and WISP-1/CCN-4 can regulate each other's activity to cooperatively control osteoblast function

(2008) Colette A. Inkson et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

All-cause mortality attributable to chronic kidney disease: a prospective cohort study based on 462 293 adults in Taiwan

(2008) Chi Pang Wen et al.   LANCET

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY