Insights from genomes of representatives of the human gut commensalBifidobacterium bifidum

Murein Lytic Enzyme TgaA of Bifidobacterium bifidum MIMBb75 Modulates Dendritic Cell Maturation through Its Cysteine- and Histidine-Dependent Amidohydrolase/Peptidase (CHAP) Amidase Domain

(2014) Simone Guglielmetti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigation of the Evolutionary Development of the Genus Bifidobacterium by Comparative Genomics

(2014) Gabriele Andrea Lugli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expression of sortase-dependent pili ofBifidobacterium bifidumPRL2010 in response to environmental gut conditions

(2014) Francesca Turroni et al.   FEMS MICROBIOLOGY LETTERS

Bifidobacterium bifidum as an example of a specialized human gut commensal

(2014) Francesca Turroni et al.   Frontiers in Microbiology

Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response

(2013) Francesca Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

(2013) F. Turroni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Extracellular Transaldolase from Bifidobacterium bifidum in Mucin Adhesion and Aggregation

(2012) Irene González-Rodríguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Finished bacterial genomes from shotgun sequence data

(2012) F. J. Ribeiro et al.   GENOME RESEARCH

Genome Sequence of the Immunomodulatory Strain Bifidobacterium bifidum LMG 13195

(2012) M. Gueimonde et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of the Probiotic Bacterium Bifidobacterium bifidum Strain BGN4

(2012) D. S. Yu et al.   JOURNAL OF BACTERIOLOGY

Diversity of Bifidobacteria within the Infant Gut Microbiota

(2012) Francesca Turroni et al.   PLoS One

Diversification of the Salmonella Fimbriae: A Model of Macro- and Microevolution

(2012) Min Yue et al.   PLoS One

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response

(2012) Scott Schwartz et al.   GENOME BIOLOGY

Global Genome Transcription Profiling of Bifidobacterium bifidum PRL2010 underIn VitroConditions and Identification of Reference Genes for Quantitative Real-Time PCR

(2011) Francesca Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ability of Bifidobacterium breve To Grow on Different Types of Milk: Exploring the Metabolism of Milk through Genome Analysis

(2011) Francesca Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

Bifidobacterial utilization of human milk oligosaccharides

(2011) David A. Sela   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

(2011) Elena Foroni et al.   Microbial Cell Factories

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

(2011) M. O'Connell Motherway et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyses of bifidobacterial prophage-like sequences

(2010) Marco Ventura et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant

(2010) Parag A. Vaishampayan et al.   Genome Biology and Evolution

Cooperation of β-galactosidase and β-N-acetylhexosaminidase from bifidobacteria in assimilation of human milk oligosaccharides with type 2 structure

(2010) Mika Miwa et al.   GLYCOBIOLOGY

Complete Genome Sequence of Bifidobacterium bifidum S17

(2010) D. Zhurina et al.   JOURNAL OF BACTERIOLOGY

Interactomics in the Human Intestine

(2010) Rolf J. Boesten et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Comparative genomics of the genus Bifidobacterium

(2010) F. Bottacini et al.   MICROBIOLOGY-SGM

Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life

(2010) L. C. Roger et al.   MICROBIOLOGY-SGM

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

(2010) F. Turroni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract

(2009) F. Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The Bifidobacterium dentium Bd1 Genome Sequence Reflects Its Genetic Adaptation to the Human Oral Cavity

(2009) Marco Ventura et al.   PLoS Genetics

annot8r: GO, EC and KEGG annotation of EST datasets

(2008) Ralf Schmid et al.   BMC BIOINFORMATICS

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

(2008) Ju-Hoon Lee et al.   BMC GENOMICS

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

(2008) D. A. Sela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA